CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:486..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNS9 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain CC9902) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 57/116 (49.14%), Postives = 73/116 (62.93%), Query Frame = -1
Query:  283 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 627
            DT+Q +KS V T CVG A  +  FLLA G KG R A+P SRI +  P  G +R QA DI  EA E+LR++D +   L+  +GQ FEKI KD  R     ++EA+ YGLIDR+I  P
Sbjct:   82 DTIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSRRQASDIEIEAREILRMKDMLNHSLADMSGQTFEKIEKDTDRDYFLSAEEAMAYGLIDRVISHP 197          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMA (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = -1
Query:  283 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 627
            DTM+ +KS V T CVG A  +  FLL+ G K  R A+P SRI +  P  G ++ QA DI  EA E+LR++D + + ++  TGQPFEKI KD  R     ++EA +YGLID++I  P
Sbjct:   82 DTMKYVKSDVVTICVGLAASMGAFLLSAGTKNKRLALPHSRIMIHQPLGGTSQRQASDIEIEAKEILRIKDMLNRSMAEMTGQPFEKIEKDTDRDYFLSAKEAKDYGLIDKVISHP 197          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP1_PROMA (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus GN=clpP1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DT+Q +K  V T CVG A  +  FLL  G KG RS++  SRI +  P G ARGQA DIR +ADE+L ++  +  ELS +TGQP  KI +D  R       EA+ YG+ID ++
Sbjct:   77 DTIQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQATDIRIQADEILFLKQKLNTELSNRTGQPLSKIAEDTDRDFYMSPSEAISYGIIDNVL 188          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_RALSO (ATP-dependent Clp protease proteolytic subunit OS=Ralstonia solanacearum GN=clpP PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 53/112 (47.32%), Postives = 69/112 (61.61%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLA G KG R A+P SRI +  P G ARGQA DI  +A E+L +R+ +   LS  TGQP +KI +D  R       +A EYGLID+++
Sbjct:  101 DTMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRYALPNSRIMIHQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVDKIARDTDRDNFMSGDQAKEYGLIDKVL 212          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_METPP (ATP-dependent Clp protease proteolytic subunit OS=Methylibium petroleiphilum (strain PM1) GN=clpP PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 52/112 (46.43%), Postives = 72/112 (64.29%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLA G KG R A+P SR+ +  P+G A+GQA DI  +A E+L++R+ +   L+ +TGQP EKI  D  R     ++EA  YGLID++I
Sbjct:   87 DTMQFIKPDVSTLCMGIAASMGAFLLAAGAKGKRFALPNSRVMIHQPSGGAQGQATDIEIQAREILKLRESLNGILAERTGQPLEKIRADSERDYFMSAEEATGYGLIDKVI 198          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_THETN (ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter tengcongensis GN=clpP PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.280e-21
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T CVG A  +A FLLA G KG R A+P S I +  P G  +GQA DI+  A+ LLR+RD + + LS  TGQP EKI  D+ R     ++EA  YG+ID I+
Sbjct:   79 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPWGGMQGQATDIKIHAERLLRLRDKLERILSENTGQPLEKIKADMERDYFMTAEEAKTYGIIDDIL 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_THESQ (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp. (strain RQ2) GN=clpP PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.280e-21
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T CVG A  +A  LLA G KG R A+P +RI +  P G A G A D+     ELLR++D + + LS+ TGQP EKI KD  R     ++EA EYG++D+++
Sbjct:   88 DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_THEP1 (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=clpP PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.280e-21
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T CVG A  +A  LLA G KG R A+P +RI +  P G A G A D+     ELLR++D + + LS+ TGQP EKI KD  R     ++EA EYG++D+++
Sbjct:   88 DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_THEMA (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.280e-21
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T CVG A  +A  LLA G KG R A+P +RI +  P G A G A D+     ELLR++D + + LS+ TGQP EKI KD  R     ++EA EYG++D+++
Sbjct:   88 DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_DESDG (ATP-dependent Clp protease proteolytic subunit OS=Desulfovibrio desulfuricans (strain G20) GN=clpP PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.280e-21
Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ + +PV T C+G A  +  FLLA G+ G R A+P SRI +  P G A+GQA DI  +A E+LR++D + + LSR TGQP EKI +   R    G + A  +G+IDRI+
Sbjct:   78 DTMQYISAPVATLCMGQAASMGAFLLAAGQPGMRFALPNSRIMIHQPMGGAQGQATDIDIQAREILRLKDRLNEILSRHTGQPLEKIVEHTDRDYFMGPENAKNFGIIDRIL 189          
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP3_SYNS91.923e-2149.14ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_PROMA1.923e-2146.55ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_PROMA1.923e-2146.43ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_RALSO2.512e-2147.32ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_METPP2.512e-2146.43ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THETN3.280e-2149.11ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THESQ3.280e-2146.43ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP13.280e-2146.43ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEMA3.280e-2146.43ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESDG3.280e-2147.32ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
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