CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:486..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_MANSM (ATP-dependent Clp protease proteolytic subunit OS=Mannheimia succiniciproducens (strain MBEL55E) GN=clpP PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.777e-20
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T CVG A  +  FLLAGG  G R+A+P +R+ +  P G  RGQA DI+  A E+L+++  + + L+  TGQPFE I +D  R     +++A  YGLID ++
Sbjct:   79 DTMQFIKPDVRTLCVGQACSMGAFLLAGGAAGKRAALPHARVMIHQPLGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQPFEVIERDTDRDNFMSAEDAKNYGLIDSVL 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_LEPCP (ATP-dependent Clp protease proteolytic subunit OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=clpP PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.777e-20
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLA G KG R ++P S+I +  P G A+GQA DI   A E+L+ R+ + + L+ +TGQ  EKI  D  R     S+EA  YGLID++I
Sbjct:   87 DTMQFIKPQVSTLCMGLAASMGAFLLAAGAKGKRFSLPNSKIMIHQPLGGAQGQATDIEIHAREILKTREQLNRILAERTGQSLEKIQNDTERDYFMSSEEAQTYGLIDQVI 198          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_FRAP2 (ATP-dependent Clp protease proteolytic subunit OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=clpP PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.777e-20
Identity = 51/112 (45.54%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +   LLAGG KG R ++P S+I +  P G  RGQA DI   A  +LR++D + K L+  TGQ  E I +D  R     + EA EYGLID +I
Sbjct:   82 DTMQFIKPDVNTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVRDTDRDNFMMADEAKEYGLIDHVI 193          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_METCA (ATP-dependent Clp protease proteolytic subunit 2 OS=Methylococcus capsulatus GN=clpP2 PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.777e-20
Identity = 53/112 (47.32%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T CVG A  +   LLAGG  G R  +P SRI +  P G  +GQA DI   A E+L VRD + K L+  TGQP EKI  D  R    G  +A+ YGLID+++
Sbjct:   76 DTMQFIKPDVSTLCVGQAASMGALLLAGGAAGKRYCLPHSRIMIHQPLGGFQGQASDIDIHAREILAVRDRLNKILAHHTGQPIEKIQIDTDRDNFMGGDDAVSYGLIDKVL 187          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_SYNAS (ATP-dependent Clp protease proteolytic subunit OS=Syntrophus aciditrophicus (strain SB) GN=clpP PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.627e-20
Identity = 53/112 (47.32%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM+ +K PV T CVG A  +   LLA GE+G RSA+P SRI +  P G  +GQA DI  +A E+LR++D +   L+  T QP ++I  D  R     SQ+A EYG+ID II
Sbjct:   79 DTMRYIKPPVATVCVGQAASMGALLLAAGEQGKRSALPHSRILIHQPLGGFQGQATDIDIQAREILRLKDELSLILADLTNQPLDRIKTDTERDYYMTSQQAKEYGIIDEII 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_STAHJ (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpP PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.627e-20
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = -1
Query:  286 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 627
            DT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + K L+ +TGQ  EKI KD  R     + EA EYGLID +++P
Sbjct:   79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNKILAERTGQSIEKIQKDTDRDNFLTADEAKEYGLIDNVMQP 192          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_MOOTA (ATP-dependent Clp protease proteolytic subunit OS=Moorella thermoacetica (strain ATCC 39073) GN=clpP PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.627e-20
Identity = 54/124 (43.55%), Postives = 72/124 (58.06%), Query Frame = -1
Query:  256 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKEDMPRK 627
            DTMQ ++  V T CVG A  +  FLLA G KG R A+P S I +  P G  +GQA DI   A  +L +RD + + LS  TG+P E+I +D  R     ++EA EYGLID +I     K ++P K
Sbjct:   80 DTMQYIRPDVSTICVGLAASMGAFLLAAGAKGKRFALPNSEIMIHQPMGGTQGQAVDIEIHAKRILAIRDNLNRILSEITGKPLEQIARDTDRDHFMTAREAREYGLIDEVI----TKRELPAK 199          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_DECAR (ATP-dependent Clp protease proteolytic subunit OS=Dechloromonas aromatica (strain RCB) GN=clpP PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.627e-20
Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLL  G KG R A+P SR+ +  P G  +GQA DI   A E+L +RD + + ++  +GQP E+I KD  R     + EA EYGLID+++
Sbjct:   92 DTMQFIKPDVSTLCIGQAASMGAFLLNAGAKGKRFALPNSRVMIHQPLGGFQGQASDIAIHAKEILSIRDRLNRIMAEHSGQPLERIEKDTDRDNFLSAAEAAEYGLIDKVL 203          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BORA1 (ATP-dependent Clp protease proteolytic subunit OS=Bordetella avium (strain 197N) GN=clpP PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.627e-20
Identity = 48/112 (42.86%), Postives = 72/112 (64.29%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C G A  +  FLLA G+KG R ++P SRI +  P+G A+GQA DI+ +A E+L +R+ + + L+  TGQ  E+I  D  R     +++AL YGL+D+++
Sbjct:   84 DTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFSLPNSRIMIHQPSGGAQGQASDIQIQAKEILDLRERLNRILAENTGQSMERIAIDTERDTFMSAEDALSYGLVDKVL 195          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMA (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus GN=clpP3 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.627e-20
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +   + T C G A  +  FLLAGG KG R A+P SRI +  P G A+GQA +I  +A E+L +++ +   L+  TGQ  EKI++D  R      QEA+EYGLID+++
Sbjct:  101 DTMQQVNPDIVTMCYGLAASMGAFLLAGGSKGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEILFLKETLNNLLAEHTGQSLEKISEDTDRDHFLSPQEAVEYGLIDKVV 212          
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_MANSM2.777e-2043.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEPCP2.777e-2045.54ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRAP22.777e-2045.54ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_METCA2.777e-2047.32ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_SYNAS3.627e-2047.32ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAHJ3.627e-2042.98ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MOOTA3.627e-2043.55ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DECAR3.627e-2043.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BORA13.627e-2042.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_PROMA3.627e-2044.64ATP-dependent Clp protease proteolytic subunit 3 O... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
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