CB304624

Overview
NameCB304624
Unique NameCB304624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2181 contig Csv1_Contig2181:363..980. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.778e-32
Identity = 63/92 (68.48%), Postives = 76/92 (82.61%), Query Frame = -1
Query:  297 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 572
            G GG+SIYG KF DENF LKHTGPG LSMANAGP+TNGSQFFITT+  SWLDG+HVVFG+V  GMDVV  +E+ G  NGTP++K++I + G+
Sbjct:   72 GTGGKSIYGNKFRDENFTLKHTGPGDLSMANAGPNTNGSQFFITTIKCSWLDGKHVVFGRVTEGMDVVQNIESLGSPNGTPRAKIIIDNCGQ 163          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 2.639e-32
Identity = 63/92 (68.48%), Postives = 76/92 (82.61%), Query Frame = -1
Query:  297 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 572
            G GGESI+GEKF DENFK KHTGPG+LSMAN G +TNGSQFF+ TV T+WLDG+HVVFGKV+ GMDVV  +E++G ++G P +  VIAD GE
Sbjct:   79 GTGGESIHGEKFDDENFKEKHTGPGVLSMANCGANTNGSQFFLCTVKTTWLDGKHVVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGE 170          

HSP 2 Score: 20.4014 bits (41), Expect = 2.639e-32
Identity = 7/12 (58.33%), Postives = 9/12 (75.00%), Query Frame = -2
Query:  575 QLYVQGGDFTLG 610
            +  +QGGDFT G
Sbjct:   66 EFMIQGGDFTEG 77          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.482e-32
Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = -1
Query:  300 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSG 572
            G GG+SIYGEKFPDENF LKH  PGLLSMANAGP+TNGSQFFITTV T WLDG+HVVFG+V  GMDVV KVE+ G  +G  ++++VI   G
Sbjct:   70 GTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGATRARIVIDKCG 160          

HSP 2 Score: 21.1718 bits (43), Expect = 4.482e-32
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = -2
Query:  575 QLYVQGGDFTLG 610
            Q  +QGGDFT G
Sbjct:   57 QFMLQGGDFTRG 68          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 5.805e-32
Identity = 67/93 (72.04%), Postives = 75/93 (80.65%), Query Frame = -1
Query:  297 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEA-EGRQNGTPKSKVVIADSGE 572
            G GG+SIYGE+FPDENFKLKH GPG +SMANAG DTNGSQFFITTV TSWLDG+HVVFGKVL GMDVV KVE+ +      P   V+I DSG+
Sbjct:  112 GTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVDSGK 204          

HSP 2 Score: 21.1718 bits (43), Expect = 5.805e-32
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  572 VQGGDFTLGE 601
            +QGGDFT G+
Sbjct:  102 IQGGDFTRGD 111          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIA2_RHIOR (Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus oryzae GN=cyp1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.837e-32
Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = -1
Query:  300 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSG 572
            G GG+SIYGEKF DENFKLKH+ PGLLSMANAGP+TNGSQFFITTV  SWLDG HVVFGKV   M++V K+E+ G  +G  K+KVVI D G
Sbjct:   69 GTGGKSIYGEKFADENFKLKHSEPGLLSMANAGPNTNGSQFFITTVPCSWLDGAHVVFGKVTKNMELVSKIESLGSASGAVKAKVVIEDCG 159          

HSP 2 Score: 21.9422 bits (45), Expect = 5.837e-32
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = -2
Query:  572 QLYVQGGDFTLGE 610
            Q  +QGGDFT G+
Sbjct:   56 QFMLQGGDFTRGD 68          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIB2_RHIOR (Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus oryzae GN=cyp9 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 7.564e-32
Identity = 67/92 (72.83%), Postives = 73/92 (79.35%), Query Frame = -1
Query:  300 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVIADSG 572
            G GG+SIYG +FPDENFKL+HT PGLLSMANAGPD+NGSQFFITTV TSWLDG+HVVFGKVL GMDVV K+E         P   VVIAD G
Sbjct:  102 GTGGKSIYGSRFPDENFKLRHTVPGLLSMANAGPDSNGSQFFITTVVTSWLDGKHVVFGKVLEGMDVVTKIEKTPTNYRSKPNVDVVIADCG 193          

HSP 2 Score: 20.4014 bits (41), Expect = 7.564e-32
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = -2
Query:  581 QLYVQGGDFT 610
            Q  +QGGDFT
Sbjct:   89 QFMIQGGDFT 98          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.152e-31
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = -1
Query:  297 LCSRR*FHSW*GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 605
            +C    F +  G GG+SIYG +FPDENF LKH GPG+LSMANAGP+TNGSQFFI T+ T WLDG+HVVFG V  GMDVV K+E+ G ++G    K+VI D G+
Sbjct:  102 MCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQ 204          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.152e-31
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = -1
Query:  297 LCSRR*FHSW*GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 605
            +C    F +  G GG+SIYG +FPDENF LKH GPG+LSMANAGP+TNGSQFFI T+ T WLDG+HVVFG V  GMDVV K+E+ G ++G    K+VI D G+
Sbjct:  103 MCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQ 205          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.505e-31
Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = -1
Query:  297 LCSRR*FHSW*GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 605
            +C    F +  G GG SIYG +FPDENF LKH GPG+LSMANAGP+TNGSQFFI T+ T WLDG+HVVFG V  GMDVV K+E+ G ++G    K+VI D G+
Sbjct:  102 MCQAGDFTNHNGTGGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQ 204          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.505e-31
Identity = 64/103 (62.14%), Postives = 77/103 (74.76%), Query Frame = -1
Query:  297 LCSRR*FHSW*GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 605
            +C    F +  G GG+SIYG KF DENF+LKHTGPG+L MANAGP+TNGSQFFITT  TSWLD RHVVFG V+ GMDVV K+E+ G Q+G    K+ + D G+
Sbjct:   61 MCQGGDFTNHNGTGGKSIYGTKFEDENFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHVVFGSVVEGMDVVKKLESLGSQSGKTNKKIAVVDCGQ 163          
The following BLAST results are available for this feature:
BLAST of CB304624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
PPIA1_RHIOR1.778e-3268.48Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus... [more]
CYP2_CAEEL2.639e-3268.48Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]
CYPH_SCHPO4.482e-3270.33Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]
PPIB_MOUSE5.805e-3272.04Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
PPIA2_RHIOR5.837e-3271.43Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus... [more]
PPIB2_RHIOR7.564e-3272.83Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus... [more]
PPIF_RAT1.152e-3161.17Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_HUMAN1.152e-3161.17Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_MOUSE1.505e-3161.17Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIA_BLAGE1.505e-3162.14Peptidyl-prolyl cis-trans isomerase OS=Blattella g... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304624 ID=CB304624; Name=CB304624; organism=Citrus sinensis; type=EST; length=617bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGCATTCGGTACTTATTT
CGGGGCTTCCATAAGCTTCTTCTACACAAGTTAGAAAAGAAACACTAAAT
GGGATGAGATAGCTATCAGAGAAAAGGATCCCCTTAAAATGAAGCACCAG
CTTGGCAAACAACCTAGGACATTTTAAAATGGCTATTACATGATAAATAG
GCAAATTAAGAGTATCTTCATGAAGGGTGAAAAGACGAGAGGATTAAAAA
GGGGTATAGCGTAATTATATAATTATGGGGGAAATCACAGAGGAAGCTCA
CCGCTGTCTGCAATGACGACTTTGCTCTTCGGAGTGCCATTCTGCCTCCC
TTCAGCTTCAACCTTGTAAACTACATCCATCCCCGATAGCACCTTTCCAA
ATACAACATGCCTGCCATCCAACCAGCTAGTTGTCACAGTTGTAATGAAG
AATTGTGAACCATTGGTGTCTGGCCCAGCATTTGCCATTGACAAAAGCCC
TGGGCCGGTGTGCTTCAGTTTGAAATTTTCGTCAGGGAACTTCTCTCCAT
AAATTGACTCTCCACCTCTTCCTCACCAAGAGTGAAATCACCTCCTTGAA
CATAAAGCTGGGAATAA
back to top