CB304624

Overview
NameCB304624
Unique NameCB304624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2181 contig Csv1_Contig2181:363..980. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIA_BOVIN (Peptidyl-prolyl cis-trans isomerase A OS=Bos taurus GN=PPIA PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 7.469e-31
Identity = 62/92 (67.39%), Postives = 72/92 (78.26%), Query Frame = -1
Query:  297 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 572
            G GG+SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ IAD G+
Sbjct:   72 GTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.469e-31
Identity = 65/103 (63.11%), Postives = 75/103 (72.82%), Query Frame = -1
Query:  297 LCSRR*FHSW*GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 605
            +C    F    G GGESIYG KF DENF+ KHTGPG+LSMANAG +TNGSQFFI TV T WLDG+HVVFG+V+ G+DVV  +E  G  +G P   VVIAD GE
Sbjct:   69 MCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGE 171          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.133e-31
Identity = 66/93 (70.97%), Postives = 71/93 (76.34%), Query Frame = -1
Query:  297 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNG-TPKSKVVIADSGE 572
            G GG+SIYG KFPDENFKLKHTGPG+LSMANAG DTNGSQFFI TV T+WLD RHVVFG VL GMDVVY +E      G  P   + IA SGE
Sbjct:  119 GTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGE 211          

HSP 2 Score: 21.1718 bits (43), Expect = 8.133e-31
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  572 VQGGDFTLGE 601
            +QGGDFT G+
Sbjct:  109 IQGGDFTKGD 118          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 8.151e-31
Identity = 67/92 (72.83%), Postives = 71/92 (77.17%), Query Frame = -1
Query:  300 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNG-TPKSKVVIADSG 572
            G GG SIYGEKF DENFKLKH G G LSMANAG DTNGSQFFITTV T WLDGRHVVFGK+L GMDVV K+E   +  G  PK  V+IA SG
Sbjct:   97 GTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASG 188          

HSP 2 Score: 21.1718 bits (43), Expect = 8.151e-31
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  572 VQGGDFTLGE 601
            +QGGDFT G+
Sbjct:   87 IQGGDFTRGD 96          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.754e-31
Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = -1
Query:  297 LCSRR*FHSW*GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 605
            +C    F +  G GGESIYG KF DENF+ KHTGPG+LSMANAG +TNGSQFFI TV T WLDG+HVVFG+V+ G+DVV  +E  G  +G P   VV+AD G+
Sbjct:   68 MCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQ 170          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.274e-30
Identity = 62/92 (67.39%), Postives = 74/92 (80.43%), Query Frame = -1
Query:  297 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 572
            G GG+SIYG KFPDENFK  H  PGLLSMANAGP+TNGSQFFITTV   WLDG+HVVFG+V+ G D+V KVE+ G  +G  K+++V+A SGE
Sbjct:   70 GTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGE 161          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.382e-30
Identity = 65/92 (70.65%), Postives = 72/92 (78.26%), Query Frame = -1
Query:  300 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVIADSG 572
            G GG+SIYG++FPDENFKLKH GPG +SMANAG DTNGSQFFITTV T+WLDG+HVVFGKVL GMDVV KVE  +      P   V IAD G
Sbjct:  103 GTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTIADCG 194          

HSP 2 Score: 21.1718 bits (43), Expect = 1.382e-30
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  572 VQGGDFTLGE 601
            +QGGDFT G+
Sbjct:   93 IQGGDFTRGD 102          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIA_RAT (Peptidyl-prolyl cis-trans isomerase A OS=Rattus norvegicus GN=Ppia PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.173e-30
Identity = 61/92 (66.30%), Postives = 71/92 (77.17%), Query Frame = -1
Query:  297 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 572
            G GG+SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  T WLDG+HVVFGKV  GM +V  +E  G +NG    K+ I+D G+
Sbjct:   72 GTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMSIVEAMERFGSRNGKTSKKITISDCGQ 163          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIA_MOUSE (Peptidyl-prolyl cis-trans isomerase A OS=Mus musculus GN=Ppia PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.173e-30
Identity = 61/92 (66.30%), Postives = 71/92 (77.17%), Query Frame = -1
Query:  297 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 572
            G GG SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ I+D G+
Sbjct:   72 GTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQ 163          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.173e-30
Identity = 61/92 (66.30%), Postives = 71/92 (77.17%), Query Frame = -1
Query:  297 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 572
            G GG SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ I+D G+
Sbjct:   72 GTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQ 163          
The following BLAST results are available for this feature:
BLAST of CB304624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
PPIA_BOVIN7.469e-3167.39Peptidyl-prolyl cis-trans isomerase A OS=Bos tauru... [more]
CP19B_ARATH7.469e-3163.11Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
PPIB_CRYNE8.133e-3170.97Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
CYP5_CAEEL8.151e-3172.83Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
CP18C_ARATH9.754e-3161.17Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CYPH_YEAST1.274e-3067.39Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]
PPIB_CHICK1.382e-3070.65Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]
PPIA_RAT2.173e-3066.30Peptidyl-prolyl cis-trans isomerase A OS=Rattus no... [more]
PPIA_MOUSE2.173e-3066.30Peptidyl-prolyl cis-trans isomerase A OS=Mus muscu... [more]
PPIA_CRIGR2.173e-3066.30Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304624 ID=CB304624; Name=CB304624; organism=Citrus sinensis; type=EST; length=617bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGCATTCGGTACTTATTT
CGGGGCTTCCATAAGCTTCTTCTACACAAGTTAGAAAAGAAACACTAAAT
GGGATGAGATAGCTATCAGAGAAAAGGATCCCCTTAAAATGAAGCACCAG
CTTGGCAAACAACCTAGGACATTTTAAAATGGCTATTACATGATAAATAG
GCAAATTAAGAGTATCTTCATGAAGGGTGAAAAGACGAGAGGATTAAAAA
GGGGTATAGCGTAATTATATAATTATGGGGGAAATCACAGAGGAAGCTCA
CCGCTGTCTGCAATGACGACTTTGCTCTTCGGAGTGCCATTCTGCCTCCC
TTCAGCTTCAACCTTGTAAACTACATCCATCCCCGATAGCACCTTTCCAA
ATACAACATGCCTGCCATCCAACCAGCTAGTTGTCACAGTTGTAATGAAG
AATTGTGAACCATTGGTGTCTGGCCCAGCATTTGCCATTGACAAAAGCCC
TGGGCCGGTGTGCTTCAGTTTGAAATTTTCGTCAGGGAACTTCTCTCCAT
AAATTGACTCTCCACCTCTTCCTCACCAAGAGTGAAATCACCTCCTTGAA
CATAAAGCTGGGAATAA
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