CB304624

Overview
NameCB304624
Unique NameCB304624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 8.755e-30
Identity = 64/93 (68.82%), Postives = 71/93 (76.34%), Query Frame = -1
Query:  297 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVIADSGE 572
            G GGESIYG KFPDENF+LKHT P  LSMANAG DTNGSQFFITTV TSWLDG+HVVFG+VL G D+V  +E A       PK  + IAD+GE
Sbjct:  100 GTGGESIYGRKFPDENFQLKHTKPYKLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGQDIVDAIENAPTGARSNPKVDITIADAGE 192          

HSP 2 Score: 21.1718 bits (43), Expect = 8.755e-30
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  572 VQGGDFTLGE 601
            +QGGDFT G+
Sbjct:   90 IQGGDFTRGD 99          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIE_RHIOR (Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus oryzae GN=cyp10 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.078e-29
Identity = 64/103 (62.14%), Postives = 76/103 (73.79%), Query Frame = -1
Query:  297 LCSRR*FHSW*GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 605
            +C    F    G GG+SIYG KF DENF LKHTGPG LSMANAG +TNGSQFFI T  T+WLDG+HVVFG+V+SGM+VV ++E  G  +G P  +VVI D GE
Sbjct:  212 MCQGGDFTKGNGTGGKSIYGGKFEDENFVLKHTGPGTLSMANAGSNTNGSQFFICTEKTTWLDGKHVVFGQVVSGMNVVREMERCGSASGKPSKRVVIVDCGE 314          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.840e-29
Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = -1
Query:  321 LCSRR*FHSW*GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSK 605
            +C    F +  G GG+SIYG +FPDENFKLKH GPG+LSMANAGP+TNGSQFFI T+ T WLDG+HVVFG V  GMDVV K+E+ G ++G    K
Sbjct:  104 MCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKK 198          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.530e-29
Identity = 66/93 (70.97%), Postives = 71/93 (76.34%), Query Frame = -1
Query:  297 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNG-TPKSKVVIADSGE 572
            GRGGESIYG KF DENF  KHT PGLLSMANAGP TNGSQFFITTV T  LDG+HVVFGKV+ GMDVV K+EA     G  P S+V IA  G+
Sbjct:   76 GRGGESIYGAKFADENFIHKHTTPGLLSMANAGPGTNGSQFFITTVATPHLDGKHVVFGKVVEGMDVVRKIEATQTDRGDKPLSEVKIAKCGQ 168          

HSP 2 Score: 21.9422 bits (45), Expect = 2.530e-29
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = -2
Query:  575 VQGGDFTLG 601
            +QGGDFTLG
Sbjct:   66 LQGGDFTLG 74          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.098e-29
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = -1
Query:  297 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 572
            G GGESIYGEKFPDE F  K   PG+LSMANAGP+TNGSQFFI TV T WLDG+HVVFG+V+ GMDVV  +E  G +NG+    V +AD G+
Sbjct:   79 GTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQ 170          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 7.265e-29
Identity = 62/92 (67.39%), Postives = 68/92 (73.91%), Query Frame = -1
Query:  297 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 572
            G GGESIYG KF DENFKLKH G G LSMANAG +TNGSQFFI    T WLDG+HVVFG V  GMDVV K+EA G Q+G     VVIA+ G+
Sbjct:   87 GTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQ 178          

HSP 2 Score: 20.7866 bits (42), Expect = 7.265e-29
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = -2
Query:  575 QGGDFTLG 598
            QGGDFT+G
Sbjct:   78 QGGDFTMG 85          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.130e-29
Identity = 63/92 (68.48%), Postives = 70/92 (76.09%), Query Frame = -1
Query:  300 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVIADSG 572
            G GG+SIYG +F DENFKL+H+ PGLLSMANAG DTNGSQFFITTV T WLDG+HVVFG+VL GMDVV K+E         P   VVIAD G
Sbjct:  102 GTGGKSIYGNRFADENFKLRHSTPGLLSMANAGRDTNGSQFFITTVVTPWLDGKHVVFGRVLEGMDVVTKIENTPTGSRSKPSVDVVIADCG 193          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.130e-29
Identity = 62/103 (60.19%), Postives = 74/103 (71.84%), Query Frame = -1
Query:  297 LCSRR*FHSW*GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 605
            +C    F +  G GGESIYG KF DENF  KHTGPG+LSMANAG +TNGSQFFI T  TSWLDG+HVVFG+V+ G++VV  +E  G  +G     VVIAD G+
Sbjct:   69 MCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQ 171          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIA_CANAL (Peptidyl-prolyl cis-trans isomerase OS=Candida albicans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.192e-28
Identity = 59/97 (60.82%), Postives = 74/97 (76.29%), Query Frame = -1
Query:  297 FHSW*GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 587
            F ++ G GG+SIYG KF DENF  +H  PGLLSMANAGP+TNGSQFFITTV   WLDG+HVVFG+V  G+D+V K+E+ G  +G    K+VI +SG+
Sbjct:   65 FTNFNGTGGKSIYGTKFADENFVKRHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTDGLDIVKKIESFGSGSGATSKKIVIEESGQ 161          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.192e-28
Identity = 62/103 (60.19%), Postives = 72/103 (69.90%), Query Frame = -1
Query:  297 LCSRR*FHSW*GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 605
            +C    F +  G GGESIYG KF DENF  KHTGPG+LSM NAG +TNGSQFFI T  TSWLDG+HVVFG+V+ GMDVV  +E  G  +G    KVV  D G+
Sbjct:   68 MCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQ 170          
The following BLAST results are available for this feature:
BLAST of CB304624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
PPIB_YARLI8.755e-3068.82Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ... [more]
PPIE_RHIOR1.078e-2962.14Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus ... [more]
PPIF_BOVIN1.840e-2963.16Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
CYPX_USEUD2.530e-2970.97Peptidyl-prolyl cis-trans isomerase OS=Unspecified... [more]
CYPH_MAIZE4.098e-2965.22Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
PPIA_DICDI7.265e-2967.39Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]
PPIB1_RHIOR9.130e-2968.48Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]
CP19A_ARATH9.130e-2960.19Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
PPIA_CANAL1.192e-2860.82Peptidyl-prolyl cis-trans isomerase OS=Candida alb... [more]
CYPH_BRANA1.192e-2860.19Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304624 ID=CB304624; Name=CB304624; organism=Citrus sinensis; type=EST; length=617bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGCATTCGGTACTTATTT
CGGGGCTTCCATAAGCTTCTTCTACACAAGTTAGAAAAGAAACACTAAAT
GGGATGAGATAGCTATCAGAGAAAAGGATCCCCTTAAAATGAAGCACCAG
CTTGGCAAACAACCTAGGACATTTTAAAATGGCTATTACATGATAAATAG
GCAAATTAAGAGTATCTTCATGAAGGGTGAAAAGACGAGAGGATTAAAAA
GGGGTATAGCGTAATTATATAATTATGGGGGAAATCACAGAGGAAGCTCA
CCGCTGTCTGCAATGACGACTTTGCTCTTCGGAGTGCCATTCTGCCTCCC
TTCAGCTTCAACCTTGTAAACTACATCCATCCCCGATAGCACCTTTCCAA
ATACAACATGCCTGCCATCCAACCAGCTAGTTGTCACAGTTGTAATGAAG
AATTGTGAACCATTGGTGTCTGGCCCAGCATTTGCCATTGACAAAAGCCC
TGGGCCGGTGTGCTTCAGTTTGAAATTTTCGTCAGGGAACTTCTCTCCAT
AAATTGACTCTCCACCTCTTCCTCACCAAGAGTGAAATCACCTCCTTGAA
CATAAAGCTGGGAATAA
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