CB304624

Overview
NameCB304624
Unique NameCB304624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2181 contig Csv1_Contig2181:363..980. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.232e-28
Identity = 60/92 (65.22%), Postives = 69/92 (75.00%), Query Frame = -1
Query:  297 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 572
            GRGGESIYG KF DENF LKHTG G+LSMANAGP+TNGSQFFIT   T WLDG H VFG+++ G  V+  +E  G Q+G P +KV I D GE
Sbjct:   82 GRGGESIYGHKFNDENFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNHTVFGQLVEGNQVLEILEQHGTQSGMPTAKVEIVDCGE 173          

HSP 2 Score: 20.7866 bits (42), Expect = 1.232e-28
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = -2
Query:  575 QGGDFTLG 598
            QGGDFT+G
Sbjct:   73 QGGDFTMG 80          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIB_SCHMA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma mansoni GN=CYP PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.557e-28
Identity = 60/92 (65.22%), Postives = 72/92 (78.26%), Query Frame = -1
Query:  300 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQN-GTPKSKVVIADSG 572
            G GG SIYG++FPDENFKL+H G G LSMANAGPDTNGSQFFITTV TSWLDG+HVVFGKV+ GM++V ++E+E   +   P   + IA  G
Sbjct:  105 GTGGFSIYGDRFPDENFKLRHVGAGWLSMANAGPDTNGSQFFITTVKTSWLDGKHVVFGKVVEGMNIVRQIESETTDSRDRPVKSIKIASCG 196          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIA_PARPR (Peptidyl-prolyl cis-trans isomerase OS=Paramecium primaurelia PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.557e-28
Identity = 60/96 (62.50%), Postives = 71/96 (73.96%), Query Frame = -1
Query:  300 FHSW*GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSG 587
            F ++ G GG+SIYGEKF DENFKLKHT P LLSMANAGP+TNGSQFFIT V   WLDG+HVVFG+V+ G D +   +    Q G PK+ + I DSG
Sbjct:   65 FTNFNGTGGKSIYGEKFADENFKLKHTKPALLSMANAGPNTNGSQFFITFVPCPWLDGKHVVFGEVVDGFDTLELFKKNSSQQGKPKTTIKIVDSG 160          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: CYP6_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.604e-28
Identity = 58/92 (63.04%), Postives = 68/92 (73.91%), Query Frame = -1
Query:  297 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 572
            GRGGESIYG  F DENF LKH G GLLSMANAGP+TNGSQFFIT V T WLDG H VFG+++ G  V+  +E  G ++G P +K+ I D GE
Sbjct:   82 GRGGESIYGRTFKDENFTLKHKGKGLLSMANAGPNTNGSQFFITFVDTPWLDGNHTVFGQIVDGSKVLDLLEQHGSRSGMPSAKIEITDCGE 173          

HSP 2 Score: 21.557 bits (44), Expect = 1.604e-28
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = -2
Query:  572 QGGDFTLGE 598
            QGGDFT+G+
Sbjct:   73 QGGDFTMGD 81          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIB_SCHPO (Peptidyl-prolyl cis-trans isomerase B OS=Schizosaccharomyces pombe GN=cyp4 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.656e-28
Identity = 62/93 (66.67%), Postives = 70/93 (75.27%), Query Frame = -1
Query:  297 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKV-EAEGRQNGTPKSKVVIADSGE 572
            G GG+SIYG +FPDENFKL H  PGLLSMANAGPD+NGSQFFITTV T WLDG HVVFG+VLSG D+V K+ +AE      P   V I  SG+
Sbjct:   95 GTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKISKAETDNRDKPLEDVKIIKSGQ 187          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.656e-28
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = -1
Query:  297 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 572
            G GG+SIYG KF DENF  KH   GLLSMANAGP+TNGSQFFITTV   WLDG+HVVFG+V  GMD+V  +E+ G  +G P++++VI ++GE
Sbjct:   90 GFGGKSIYGSKFADENFVKKHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGTASGKPRAEIVIEEAGE 181          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIA_SCHMA (Peptidyl-prolyl cis-trans isomerase OS=Schistosoma mansoni PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.469e-28
Identity = 63/103 (61.17%), Postives = 75/103 (72.82%), Query Frame = -1
Query:  297 LCSRR*FHSW*GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 605
            +C    F +  G GG+SIYG KF DENF  KH    L SMANAGP+TNGSQFFITTV  SWLDG+HVVFGKV+SG+DVV K+E+ G  +G P  K++I D GE
Sbjct:   59 MCQGGDFTNGDGTGGKSIYGNKFKDENFNHKHEAFSL-SMANAGPNTNGSQFFITTVPCSWLDGKHVVFGKVVSGIDVVKKMESLGSTSGKPSKKIIIEDCGE 160          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPID_EMENI (Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans GN=cpr6 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.548e-28
Identity = 62/97 (63.92%), Postives = 73/97 (75.26%), Query Frame = -1
Query:  297 FHSW*GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 587
            F ++ G GGESIYGEKFPDENF+LKH  P LLSMAN+GP TNGSQFFITTV T  LDG+HVVFG+V++G  VV K+E    Q   P + V IA+ GE
Sbjct:   77 FTAFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKIENMPTQADKPTTDVTIAECGE 173          

HSP 2 Score: 20.4014 bits (41), Expect = 4.548e-28
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = -2
Query:  581 QLYVQGGDFT 610
            Q  +QGGDFT
Sbjct:   69 QFMIQGGDFT 78          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPID_ASPFU (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus fumigatus GN=cpr6 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.919e-28
Identity = 61/97 (62.89%), Postives = 72/97 (74.23%), Query Frame = -1
Query:  297 FHSW*GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 587
            F ++ G GGESIYGEKFPDENF+LKH  P LLSMAN+GP TNGSQFFITTV T  LDG+HVVFG+V++G  +V K+E    Q   P + V I D GE
Sbjct:   82 FTNFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSIVRKIENMPTQADKPTTDVTIVDCGE 178          

HSP 2 Score: 20.4014 bits (41), Expect = 5.919e-28
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = -2
Query:  581 QLYVQGGDFT 610
            Q  +QGGDFT
Sbjct:   74 QFMIQGGDFT 83          
BLAST of CB304624 vs. ExPASy Swiss-Prot
Match: PPIB_GIBZE (Peptidyl-prolyl cis-trans isomerase B OS=Gibberella zeae GN=CPR2 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.980e-28
Identity = 61/93 (65.59%), Postives = 72/93 (77.42%), Query Frame = -1
Query:  297 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVIADSGE 572
            G GG+SIYG++F DENFKLKHT  GLLSMANAG DTNGSQFFITTV TSWLDG+HVVFG+VL G +++ K+E ++      P   V IA SGE
Sbjct:  103 GTGGKSIYGDRFKDENFKLKHTKKGLLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGYEIIEKIENSKTGAADRPVEAVKIAKSGE 195          

HSP 2 Score: 21.1718 bits (43), Expect = 5.980e-28
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  572 VQGGDFTLGE 601
            +QGGDFT G+
Sbjct:   93 IQGGDFTKGD 102          
The following BLAST results are available for this feature:
BLAST of CB304624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
CYP5_RHIOR1.232e-2865.22Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
PPIB_SCHMA1.557e-2865.22Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIA_PARPR1.557e-2862.50Peptidyl-prolyl cis-trans isomerase OS=Paramecium ... [more]
CYP6_RHIOR1.604e-2863.04Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizop... [more]
PPIB_SCHPO2.656e-2866.67Peptidyl-prolyl cis-trans isomerase B OS=Schizosac... [more]
CYPC_YEAST2.656e-2863.04Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
PPIA_SCHMA3.469e-2861.17Peptidyl-prolyl cis-trans isomerase OS=Schistosoma... [more]
PPID_EMENI4.548e-2863.92Peptidyl-prolyl cis-trans isomerase D OS=Emericell... [more]
PPID_ASPFU5.919e-2862.89Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPIB_GIBZE5.980e-2865.59Peptidyl-prolyl cis-trans isomerase B OS=Gibberell... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304624 ID=CB304624; Name=CB304624; organism=Citrus sinensis; type=EST; length=617bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGCATTCGGTACTTATTT
CGGGGCTTCCATAAGCTTCTTCTACACAAGTTAGAAAAGAAACACTAAAT
GGGATGAGATAGCTATCAGAGAAAAGGATCCCCTTAAAATGAAGCACCAG
CTTGGCAAACAACCTAGGACATTTTAAAATGGCTATTACATGATAAATAG
GCAAATTAAGAGTATCTTCATGAAGGGTGAAAAGACGAGAGGATTAAAAA
GGGGTATAGCGTAATTATATAATTATGGGGGAAATCACAGAGGAAGCTCA
CCGCTGTCTGCAATGACGACTTTGCTCTTCGGAGTGCCATTCTGCCTCCC
TTCAGCTTCAACCTTGTAAACTACATCCATCCCCGATAGCACCTTTCCAA
ATACAACATGCCTGCCATCCAACCAGCTAGTTGTCACAGTTGTAATGAAG
AATTGTGAACCATTGGTGTCTGGCCCAGCATTTGCCATTGACAAAAGCCC
TGGGCCGGTGTGCTTCAGTTTGAAATTTTCGTCAGGGAACTTCTCTCCAT
AAATTGACTCTCCACCTCTTCCTCACCAAGAGTGAAATCACCTCCTTGAA
CATAAAGCTGGGAATAA
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