CB304629

Overview
NameCB304629
Unique NameCB304629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13509 contig Csv1_Contig13509:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: ATOB_ECOLI (Acetyl-CoA acetyltransferase OS=Escherichia coli (strain K12) GN=atoB PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.101e-29
Identity = 71/143 (49.65%), Postives = 92/143 (64.34%), Query Frame = -2
Query:  265 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 693
            L  LRP+F +  GTVTAGNAS I+DGA ALV++     L  GL  +A+I  YA     P +    P  A  KA+  AGL+ + +D  E NEAFA   LA  K LG + +KVNV+GGA+ALGHP+G SGARILVTLL  ++ ++
Sbjct:  229 LGALRPAF-DKAGTVTAGNASGINDGAAALVIMEESAALAAGLTPLARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKNLGFDSEKVNVNGGAIALGHPIGASGARILVTLLHAMQARD 370          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_VIBVY (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus (strain YJ016) GN=fadA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.437e-29
Identity = 71/149 (47.65%), Postives = 97/149 (65.10%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L +LRP F    GTVTAG +S++SDGA+A++++S EK  +LG+ + A+I G A A   P +    P  A  KA+  AGL    +D  E+NEAFA  +L   K LGL     +KVN++GGA+ALGHPLGCSGARI  TL+ ++  K+ KY
Sbjct:  219 LSQLRPVFDPANGTVTAGTSSALSDGASAMLIMSEEKANELGVTIRARIKGMAIAGCDPSIMGYGPVPATQKALKRAGLSIEDMDVIELNEAFAAQSLPCAKDLGLLDVMDEKVNLNGGAIALGHPLGCSGARISTTLINLMEAKDAKY 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_VIBVU (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fadA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.437e-29
Identity = 71/149 (47.65%), Postives = 97/149 (65.10%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L +LRP F    GTVTAG +S++SDGA+A++++S EK  +LG+ + A+I G A A   P +    P  A  KA+  AGL    +D  E+NEAFA  +L   K LGL     +KVN++GGA+ALGHPLGCSGARI  TL+ ++  K+ KY
Sbjct:  219 LSQLRPVFDPANGTVTAGTSSALSDGASAMLIMSEEKANELGVTIRARIKGMAIAGCDPSIMGYGPVPATQKALKRAGLSIEDMDVIELNEAFAAQSLPCAKDLGLLDVMDEKVNLNGGAIALGHPLGCSGARISTTLINLMEAKDAKY 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_PSEOL (3-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans GN=fadA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.437e-29
Identity = 68/144 (47.22%), Postives = 94/144 (65.28%), Query Frame = -2
Query:  271 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVA---LANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 693
            L  L+P+F   GGTVTAG +S I+DGA+ +V++SG++ + LG+Q +A I   A A   P +    P  +  KA+  AGL  + +D  E+NEAFA  A   L + K+L    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  223 LASLKPAFNPKGGTVTAGTSSQITDGASCMVVMSGQRAMDLGIQPLAVIRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQALPVLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_PSEPU (3-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=fadA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.877e-29
Identity = 67/144 (46.53%), Postives = 94/144 (65.28%), Query Frame = -2
Query:  271 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVA---LANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 693
            L  L+P+F   GGTVTAG +S I+DGA+ ++++SG++ + LG+Q +A I   A A   P +    P  +  KA+  AGL  + +D  E+NEAFA  A   L + K+L    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  223 LASLKPAFNPKGGTVTAGTSSQITDGASCMIVMSGQRAMDLGIQPLAVIRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQALPVLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_PSEPK (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain KT2440) GN=fadA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.877e-29
Identity = 67/144 (46.53%), Postives = 94/144 (65.28%), Query Frame = -2
Query:  271 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVA---LANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 693
            L  L+P+F   GGTVTAG +S I+DGA+ ++++SG++ + LG+Q +A I   A A   P +    P  +  KA+  AGL  + +D  E+NEAFA  A   L + K+L    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  223 LASLKPAFNPKGGTVTAGTSSQITDGASCMIVMSGQRAMDLGIQPLAVIRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQALPVLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_PSEP1 (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=fadA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.877e-29
Identity = 67/144 (46.53%), Postives = 94/144 (65.28%), Query Frame = -2
Query:  271 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVA---LANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 693
            L  L+P+F   GGTVTAG +S I+DGA+ ++++SG++ + LG+Q +A I   A A   P +    P  +  KA+  AGL  + +D  E+NEAFA  A   L + K+L    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  223 LASLKPAFNPKGGTVTAGTSSQITDGASCMIVMSGQRAMDLGIQPLAVIRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQALPVLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_PSEE4 (3-ketoacyl-CoA thiolase OS=Pseudomonas entomophila (strain L48) GN=fadA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.877e-29
Identity = 67/144 (46.53%), Postives = 94/144 (65.28%), Query Frame = -2
Query:  271 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVA---LANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 693
            L  L+P+F   GGTVTAG +S I+DGA+ ++++SG++ + LG+Q +A I   A A   P +    P  +  KA+  AGL  + +D  E+NEAFA  A   L + K+L    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  223 LASLKPAFNPKGGTVTAGTSSQITDGASCMIVMSGQRAMDLGIQPLAVIRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQALPVLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_MARMS (3-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain MWYL1) GN=fadA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.877e-29
Identity = 71/146 (48.63%), Postives = 95/146 (65.07%), Query Frame = -2
Query:  265 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFA---VVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 693
            L KL P F    GTVTAG +S++SDGA+A++++S +K  +LGL  IAK+   A A   P +    P  A  KA+  AGL  + +D  E+NEAFA   +  L +  LL L  DKVN++GGA+ALGHPLGCSG RI  TLL V+R+K+
Sbjct:  223 LAKLAPVFMPKVGTVTAGTSSALSDGASAMLMMSAKKAEELGLTPIAKVRSMAVAGCDPAIMGYGPVPATKKALKRAGLTIADIDIVELNEAFAAQSIPVLKDLGLLDLVDDKVNLNGGAIALGHPLGCSGTRISTTLLNVMREKD 368          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_PSESM (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. tomato GN=fadA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.452e-29
Identity = 68/144 (47.22%), Postives = 93/144 (64.58%), Query Frame = -2
Query:  271 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVA---LANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 693
            L  L+P+F   GGTVTAG +S I+DGA+ ++++S ++   LG+Q +A I   A A   P +    P  A  KA+  AGL  S +D +E+NEAFA  A   L + K+L    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  223 LAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAQDLGIQPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLSISDIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
The following BLAST results are available for this feature:
BLAST of CB304629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
ATOB_ECOLI1.101e-2949.65Acetyl-CoA acetyltransferase OS=Escherichia coli (... [more]
FADA_VIBVY1.437e-2947.653-ketoacyl-CoA thiolase OS=Vibrio vulnificus (stra... [more]
FADA_VIBVU1.437e-2947.653-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fa... [more]
FADA_PSEOL1.437e-2947.223-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans ... [more]
FADA_PSEPU1.877e-2946.533-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=f... [more]
FADA_PSEPK1.877e-2946.533-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEP11.877e-2946.533-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEE41.877e-2946.533-ketoacyl-CoA thiolase OS=Pseudomonas entomophila... [more]
FADA_MARMS1.877e-2948.633-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain... [more]
FADA_PSESM2.452e-2947.223-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304629 ID=CB304629; Name=CB304629; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGCAAAGCCAGCCAGATA
ATTATTATCTTTTTATTGAAGACGAAAGCACATATGAATAAGAAATGGAG
ATACAATTGCACAACACCCCACCCAAATGGGCCATAATTATCCTCCACAA
GAAGGGTGCAACCTCGTTGATAATAATCCGAACAGAAAATGCTTACACAA
GCTCTACAACAAGTGCCGATGCACCTCCTCCTCCGTTGCAAACGCCACCA
ACACCGTATTTCCAGTTTTTCTGCCTAAGTACCCCCAAAAGTGTGACCAA
GATACGAGCTCCGCTGCAGCCCAGAGGATGTCCCAAAGCTACTGCTCCAC
CATGGACATTAACCTTGTCAGGATTTAGTCCAAGCAATTTCTGGTTTGCA
AGGGCGACGACAGCAAAGGCCTCATTTATTTCGTAACAGTCAACTTGAGA
AGCCTCCAAGCCAGCATTTGAAATGGCTTTAGGTATGGCTAGGGCTGGAG
CTGTTGTAAACATCTCTGGTGCCTGAGCAGCATCAGCATATCCTGTGATC
TTGGCGATCACTTGCAAACCCAGCTTAAGTACCTTCTCTCCACTGACTAG
AACTAATGCTGTAGCTCCATCACTTATACTAGAGGCATTGCCAGCCGTAA
CAGTTCCTCCATTCTCCTTGAAACTTGGTCGAAGCTTCCTCAATTTTGCC
GGGTCAAACTTGCCTAAA
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