CB304644

Overview
NameCB304644
Unique NameCB304644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THLA_STAAB (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB0304 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.790e-24
Identity = 58/119 (48.74%), Postives = 74/119 (62.18%), Query Frame = -2
Query:   39 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 395
            V +    RTP+G F G+   V A  LG+  IE  +K     P  + EV  GNVL A  GQ PAR AA+  G+P +V   T+NKVC SG+K++ LA QSI  G NDIV+AGGME+MS +P
Sbjct:    4 VVLAAAYRTPIGVFGGAFKDVPAYDLGATLIEHIIKETGLNPSEINEVIIGNVLQAGQGQNPARIAAMKGGLPETVPVFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSP 122          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIL_PARDE (Acetyl-CoA acetyltransferase OS=Paracoccus denitrificans GN=phaA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.466e-24
Identity = 58/117 (49.57%), Postives = 75/117 (64.10%), Query Frame = -2
Query:   39 IVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 389
            IV  ARTP+G FLGS +++ A +LG+I ++  ++RA   P  V E   G VL+A  GQ PARQA +  G+P       IN+VC SG++ V LAAQ + LG   IVVAGG ESMS AP
Sbjct:    6 IVSAARTPVGSFLGSFANLPAHELGAIVLKAVVERAGIDPSEVSETILGQVLTAAQGQNPARQAHIKVGLPRESAAWVINQVCGSGLRTVALAAQQVLLGDARIVVAGGQESMSLAP 122          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIL_THIVI (Acetyl-CoA acetyltransferase OS=Thiocystis violacea GN=phbA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.444e-24
Identity = 57/122 (46.72%), Postives = 78/122 (63.93%), Query Frame = -2
Query:   30 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYL 395
            + IV   RT +G F G+LS++ AT +G+  ++  ++R    P  V EV  G VL+A  GQ PARQ  L AG+P++V   TINKVC SG+KAV LA Q++  G  +IV+AGG ESMS +   L
Sbjct:    5 IVIVDAGRTAIGTFGGALSALQATDIGTTVLKALIERTGIAPEQVSEVILGQVLTAGCGQNPARQTTLMAGLPHTVPAMTINKVCGSGLKAVHLAMQAVACGDAEIVIAGGQESMSQSSHVL 126          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: ATOB_PSEAE (Acetyl-CoA acetyltransferase OS=Pseudomonas aeruginosa GN=atoB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.444e-24
Identity = 58/121 (47.93%), Postives = 78/121 (64.46%), Query Frame = -2
Query:   39 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 401
            +DV IV   RT +G F GSL+ + A +LG+  I   L++       V EV  G VL+A  GQ PARQAA+ AG+P  V   T+NKVC SG+KA+ L AQ+I+ G  +++VAGG E+MS AP
Sbjct:    2 QDVVIVAATRTAVGSFQGSLAGIPAPELGAAVIRRLLEQTGLDAGQVDEVILGQVLTAGSGQNPARQAAIKAGLPVGVPAMTLNKVCGSGLKALHLGAQAIRCGDAEVIVAGGQENMSLAP 122          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THLA_STAES (Probable acetyl-CoA acyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2384 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.440e-23
Identity = 57/115 (49.57%), Postives = 73/115 (63.48%), Query Frame = -2
Query:   30 RTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYL 374
            RTP+G F G    + A +LG+  I   L+ +   P  + EV  GNVL A  GQ PAR AA+  G+P +V   T+NKVC SG+KA+ LA QSI  G N+IV+AGGMESMS +P  L
Sbjct:   11 RTPIGVFGGVFKDIPAYELGATVIRQILEHSQIDPNEINEVILGNVLQAGQGQNPARIAAIHGGVPEAVPSFTVNKVCGSGLKAIQLAYQSIVAGDNEIVIAGGMESMSQSPMLL 125          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THLA_STAEQ (Probable acetyl-CoA acyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0032 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.440e-23
Identity = 57/115 (49.57%), Postives = 73/115 (63.48%), Query Frame = -2
Query:   30 RTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYL 374
            RTP+G F G    + A +LG+  I   L+ +   P  + EV  GNVL A  GQ PAR AA+  G+P +V   T+NKVC SG+KA+ LA QSI  G N+IV+AGGMESMS +P  L
Sbjct:   11 RTPIGVFGGVFKDIPAYELGATVIRQILEHSQIDPNEINEVILGNVLQAGQGQNPARIAAIHGGVPEAVPSFTVNKVCGSGLKAIQLAYQSIVAGDNEIVIAGGMESMSQSPMLL 125          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THL_BACSU (Acetyl-CoA acetyltransferase OS=Bacillus subtilis GN=mmgA PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.761e-21
Identity = 60/121 (49.59%), Postives = 75/121 (61.98%), Query Frame = -2
Query:   39 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 401
            R   IV  ARTP G F G L  V A +LG I ++ AL++A      V+    G V+ A  GQ P+RQAA  AG+P SV   T+NKVC+SG++AV L  Q I+    DI+VAGGMESMSN P
Sbjct:    2 RKTVIVSAARTPFGKFGGVLKEVKAAELGGIVMKEALQQAGVSGDDVEGNVMGMVVQAGSGQIPSRQAARLAGMPWSVPSETLNKVCASGLRAVTLCDQMIRAQDADILVAGGMESMSNIP 122          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIL_RHIME (Acetyl-CoA acetyltransferase OS=Rhizobium meliloti GN=phbA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.922e-21
Identity = 54/119 (45.38%), Postives = 72/119 (60.50%), Query Frame = -2
Query:   39 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 395
            + I   ART +G F G+  +  A +LG+ AI+  L+RA  +   V EV  G VL A  GQ PARQAA+ AG+P       +N++C SG++AV L  Q I  G   ++VAGGMESMS AP
Sbjct:    6 IVIASAARTAVGSFNGAFGNTLAHELGAAAIKAVLERAGVEAGEVDEVILGQVLPAGEGQNPARQAAMKAGLPQEKTAWGMNQLCGSGLRAVALGMQQIATGDAKVIVAGGMESMSMAP 124          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIL_ZOORA (Acetyl-CoA acetyltransferase OS=Zoogloea ramigera GN=phbA PE=1 SV=4)

HSP 1 Score: 99.7525 bits (247), Expect = 6.691e-21
Identity = 53/117 (45.30%), Postives = 70/117 (59.83%), Query Frame = -2
Query:   39 IVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 389
            ++  ART +G F G+ ++  A +LG+  I   L+RA      V EV  G VL A  GQ PARQAA+ AG+P       +N++C SG++AV L  Q I  G   I+VAGGMESMS AP
Sbjct:    7 VIASARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THL_CLODI (Acetyl-CoA acetyltransferase (Fragment) OS=Clostridium difficile GN=thi PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 9.998e-17
Identity = 47/93 (50.54%), Postives = 59/93 (63.44%), Query Frame = -2
Query:  123 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKA 401
            R+V I   ART +G F G+  SVSA +LG  A + A+KRAN  P ++ E   G VL+A LGQ  ARQ ALGAGIP      TIN VC SG+++
Sbjct:    2 REVVIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGLGQNIARQIALGAGIPVEKPAMTINIVCGSGLRS 94          
The following BLAST results are available for this feature:
BLAST of CB304644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
THLA_STAAB3.790e-2448.74Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THIL_PARDE6.466e-2449.57Acetyl-CoA acetyltransferase OS=Paracoccus denitri... [more]
THIL_THIVI8.444e-2446.72Acetyl-CoA acetyltransferase OS=Thiocystis violace... [more]
ATOB_PSEAE8.444e-2447.93Acetyl-CoA acetyltransferase OS=Pseudomonas aerugi... [more]
THLA_STAES1.440e-2349.57Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAEQ1.440e-2349.57Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THL_BACSU1.761e-2149.59Acetyl-CoA acetyltransferase OS=Bacillus subtilis ... [more]
THIL_RHIME3.922e-2145.38Acetyl-CoA acetyltransferase OS=Rhizobium meliloti... [more]
THIL_ZOORA6.691e-2145.30Acetyl-CoA acetyltransferase OS=Zoogloea ramigera ... [more]
THL_CLODI9.998e-1750.54Acetyl-CoA acetyltransferase (Fragment) OS=Clostri... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_H05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_H05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304644 ID=CB304644; Name=CB304644; organism=Citrus sinensis; type=EST; length=477bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAGATACTTGGGCGCATTGGA
CATGCTTTCCATGCCACCCGCAACAACAATATCATTGATACCCAATTGAA
TACTCTGTGCAGCAAGCATTACAGCTTTCATCCCAGATGAACAGACTTTG
TTAATAGTGGTGCATACGACAGAATTAGGAATCCCAGCACCTAAGGCGGC
CTGTCTAGCGGGAGCCTGTCCTAAATTGGCGCTAAGAACGTTCCCAAAGA
AAACTTCTTGCACAAGGAGTGGTTTCGCGTTGGCCCTCTTAAGAGCACAT
TCGATAGCAATGGAACCCAGCTTTGTAGCTGAAACAGACGAGAGCGAGCC
AAGAAAGCCTCCCATTGGTGTACGTGCAACACCCACAATACAAACATCTC
GTGCTTTGATAGATTCTGAAGGTTCTAAAGGCACCATGCTAAATAGTATC
TTCAAAGAATCTTTAACTTTAAACCCC
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