CB304644

Overview
NameCB304644
Unique NameCB304644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: CATF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=catF PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.723e-14
Identity = 45/119 (37.82%), Postives = 70/119 (58.82%), Query Frame = -2
Query:   39 IVGVARTPMGGFLGSLSSVSATKLGSIAIECALKR-ANAKPLLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 389
            IV   RTP G + G L++V A  LG+I I   ++R  +     V +V +G    A    +   R +AL AG+P  V  TT+N++C S + A+ +AA++I+ G   +++AGG+ESMS AP
Sbjct:    6 IVDAIRTPFGRYAGGLAAVRADDLGAIPIAALIERNPSVNWAQVDDVIYGCANQAGEDNRNVGRMSALLAGLPVEVPATTVNRLCGSSLDAIAMAARAIKAGEAHLIIAGGVESMSRAP 124          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIKA_CANTR (3-ketoacyl-CoA thiolase A, peroxisomal OS=Candida tropicalis PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.922e-14
Identity = 46/118 (38.98%), Postives = 66/118 (55.93%), Query Frame = -2
Query:   48 DVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMS 398
            DV IV   RT +G GF GS  SV +  + +  ++  +K+ N  P L+++V  GNVL+   G    R A L AGIP +     +N+ CSSG+ A+   A  I+ G  +  +AGG ESMS
Sbjct:   26 DVVIVAAYRTAIGKGFKGSFRSVRSEFILTEFLKEFIKKTNIDPSLIEDVAIGNVLNQAAGATEHRGACLAAGIPYTAAFIAVNRFCSSGLMAISDIANKIKTGEIECGLAGGAESMS 143          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIM_MOUSE (3-ketoacyl-CoA thiolase, mitochondrial OS=Mus musculus GN=Acaa2 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.035e-13
Identity = 43/122 (35.25%), Postives = 60/122 (49.18%), Query Frame = -2
Query:   39 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAP-ARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 401
            R V IV   RTP G + G L   SAT L   A   AL      P  +  V  GNV+ ++   A  AR   L  G+P      T+N++C SG ++++   Q I     ++V+ GG ESMS +P
Sbjct:    5 RGVFIVAAKRTPFGAYGGLLKDFSATDLTEFAARAALSAGKVPPETIDSVIVGNVMQSSSDAAYLARHVGLRVGVPTETGALTLNRLCGSGFQSIVSGCQEICSKDAEVVLCGGTESMSQSP 126          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIM_BOVIN (3-ketoacyl-CoA thiolase, mitochondrial OS=Bos taurus GN=ACAA2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 43/122 (35.25%), Postives = 59/122 (48.36%), Query Frame = -2
Query:   39 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAP-ARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 401
            R V IV   RTP G + G L   + T +   A   AL      P  V  V  GNV+ ++      AR   L  GIP      TIN++C SG ++++   Q I    +++V+ GG ESMS AP
Sbjct:    5 RGVFIVAAKRTPFGAYGGLLKDFTPTDMAEFAARAALSAGRVSPETVDSVVVGNVMQSSSDAIYLARHVGLRVGIPKETPAITINRLCGSGFQSIVSGCQEICSRDSEVVLCGGTESMSQAP 126          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIKB_CANTR (3-ketoacyl-CoA thiolase B, peroxisomal OS=Candida tropicalis PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = -2
Query:   48 DVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMS 398
            DV IV   RT +G GF GS  +V +  + +  ++  +K+ N  P L+++V  GNVL+   G    R A L AGIP +     +N+ CSSG+ A+   A  I+ G  +  +AGG ESMS
Sbjct:   26 DVVIVAAYRTAIGKGFKGSFRNVHSEFILTEFLKEFIKKTNIDPSLIEDVAIGNVLNQAAGATEHRGACLAAGIPYTAAFIAVNRFCSSGLMAISDIANKIKTGEIECGLAGGAESMS 143          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIM_RAT (3-ketoacyl-CoA thiolase, mitochondrial OS=Rattus norvegicus GN=Acaa2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.305e-13
Identity = 42/122 (34.43%), Postives = 60/122 (49.18%), Query Frame = -2
Query:   39 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAP-ARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 401
            R V IV   RTP G + G L   +AT L   A   AL      P  +  V  GNV+ ++   A  AR   L  G+P      T+N++C SG ++++   Q I     ++V+ GG ESMS +P
Sbjct:    5 RGVFIVAAKRTPFGAYGGLLKDFTATDLTEFAARAALSAGKVPPETIDSVIVGNVMQSSSDAAYLARHVGLRVGVPTETGALTLNRLCGSGFQSIVSGCQEICSKDAEVVLCGGTESMSQSP 126          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: FADA_AERS4 (3-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (strain A449) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.144e-12
Identity = 46/124 (37.10%), Postives = 70/124 (56.45%), Query Frame = -2
Query:   39 RDVCIVGVARTPMGGFLG-SLSSVSATKLGS-IAIECALKRANAKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 401
            +DV IV   RTPMG   G +  +V A  L + +     L+  N  P  ++++++G V      G   AR AAL AGIP  V   T+N++C S M+A+  A+++IQ+G  DI + GG+E M + P
Sbjct:    2 KDVVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMSSILLRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHMGHVP 125          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: FADA_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.144e-12
Identity = 47/124 (37.90%), Postives = 71/124 (57.26%), Query Frame = -2
Query:   39 RDVCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANAKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 401
            +DV IV   RTPMG   G +  +V A  L +  ++  L R  N  P  ++++++G V      G   AR AAL AGIP  V   T+N++C S M+A+  A+++IQ+G  DI + GG+E M + P
Sbjct:    2 KDVVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMKSILLRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHMGHVP 125          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIK_YARLI (3-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia lipolytica GN=POT1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.494e-12
Identity = 51/146 (34.93%), Postives = 73/146 (50.00%), Query Frame = -2
Query:   45 DSLKILFSMVPLEPSESIKA------RDVCIVGVARTP-MGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSN 461
            D L  L + +   P++ + A       DV I    RT    G  G     S+++L +  +E  +K +   P L+ +V  GNVL+A  G    R A L AGIP +V    +N+ CSSG+ AV   A  I+ G  DI +  G+ESMSN
Sbjct:    2 DRLNNLATQLEQNPAKGLDAITSKNPDDVVITAAYRTAHTKGGKGLFKDTSSSELLASLLEGLVKESKIDPKLIGDVVCGNVLAAGAGATEHRAACLVAGIPETVPFVALNRQCSSGLMAVNDVANKIRAGQIDIGIGCGVESMSN 147          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: FADA_MARAV (3-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.494e-12
Identity = 49/129 (37.98%), Postives = 69/129 (53.49%), Query Frame = -2
Query:   39 SIKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKRANAK--PLLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 413
            S+  RDV +V   RTPMG    G   +V A  L +  IE   +R N K  P  V++V +G V  +   G   ARQ +L   IP+     T+N++C S M A+  AAQ+IQ G  D+ + GG+E M + P
Sbjct:    2 SLNPRDVVVVDCVRTPMGRAKNGCFRNVRAETLSAALIEALFER-NPKLDPKEVEDVIWGCVNQTKEQGFNVARQISLLTRIPHESAAQTVNRLCGSAMSAIHTAAQAIQTGNGDVFLVGGVEHMGHVP 129          
The following BLAST results are available for this feature:
BLAST of CB304644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CATF_ACIAD2.723e-1437.82Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
THIKA_CANTR7.922e-1438.983-ketoacyl-CoA thiolase A, peroxisomal OS=Candida ... [more]
THIM_MOUSE1.035e-1335.253-ketoacyl-CoA thiolase, mitochondrial OS=Mus musc... [more]
THIM_BOVIN1.765e-1335.253-ketoacyl-CoA thiolase, mitochondrial OS=Bos taur... [more]
THIKB_CANTR1.765e-1338.143-ketoacyl-CoA thiolase B, peroxisomal OS=Candida ... [more]
THIM_RAT2.305e-1334.433-ketoacyl-CoA thiolase, mitochondrial OS=Rattus n... [more]
FADA_AERS41.144e-1237.103-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (... [more]
FADA_AERHH1.144e-1237.903-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
THIK_YARLI1.494e-1234.933-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia l... [more]
FADA_MARAV1.494e-1237.983-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_H05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_H05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304644 ID=CB304644; Name=CB304644; organism=Citrus sinensis; type=EST; length=477bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAGATACTTGGGCGCATTGGA
CATGCTTTCCATGCCACCCGCAACAACAATATCATTGATACCCAATTGAA
TACTCTGTGCAGCAAGCATTACAGCTTTCATCCCAGATGAACAGACTTTG
TTAATAGTGGTGCATACGACAGAATTAGGAATCCCAGCACCTAAGGCGGC
CTGTCTAGCGGGAGCCTGTCCTAAATTGGCGCTAAGAACGTTCCCAAAGA
AAACTTCTTGCACAAGGAGTGGTTTCGCGTTGGCCCTCTTAAGAGCACAT
TCGATAGCAATGGAACCCAGCTTTGTAGCTGAAACAGACGAGAGCGAGCC
AAGAAAGCCTCCCATTGGTGTACGTGCAACACCCACAATACAAACATCTC
GTGCTTTGATAGATTCTGAAGGTTCTAAAGGCACCATGCTAAATAGTATC
TTCAAAGAATCTTTAACTTTAAACCCC
back to top