CB304644

Overview
NameCB304644
Unique NameCB304644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIKA_MOUSE (3-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musculus GN=Acaa1a PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.328e-12
Identity = 45/120 (37.50%), Postives = 65/120 (54.17%), Query Frame = -2
Query:   48 ARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMS 404
            A DV +V   RTP+G    G   + +  +L S  +   L+    KP  + ++  GNVL    G   AR A   +GIP +V  +T+N+ CSSG++AV   A  I+ G  DI +A G+ESMS
Sbjct:   35 ASDVVVVHGRRTPIGRASRGGFKNTTPDELLSAVLTAVLQDVRLKPEQLGDISVGNVLEPGAGAVMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMS 154          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: FADA_SACD2 (3-ketoacyl-CoA thiolase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12
Identity = 46/126 (36.51%), Postives = 68/126 (53.97%), Query Frame = -2
Query:   45 SIKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANAKPLLVQEVFFGNVLS-ANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSN 413
            S++ RDV IV  ARTPMG    G   +V A  L +  I   L R A   P  + ++ +G V+     G   AR   L AG+P++V   T+N++C S M A+  AA +I  G+ D+ + GG+E M +
Sbjct:    2 SLQPRDVVIVDYARTPMGRSKNGCYRNVRADDLSADLITGLLARNAALDPAQIDDMIWGCVMQRGEQGFNVARNILLRAGLPHTVPAQTVNRLCGSSMSALHTAAANIMAGLGDVYLVGGVEHMGH 127          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIKB_RAT (3-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus norvegicus GN=Acaa1b PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.265e-11
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = -2
Query:   48 ARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMS 404
            A DV +V   RTP+G    G     +  +L S  +   L+    KP  + ++  GNVL    G A AR A   +GIP +V  + +N+ CSSG++AV   A  I+ G  DI +A G+ESM+
Sbjct:   35 ASDVVVVHGRRTPIGRAGRGGFKDTTPDELLSAVLTAVLQDVKLKPECLGDISVGNVLQPGAGAAMARIAQFLSGIPETVPLSAVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMT 154          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: FADA_CHRSD (3-ketoacyl-CoA thiolase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.265e-11
Identity = 44/129 (34.11%), Postives = 69/129 (53.49%), Query Frame = -2
Query:   39 SIKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANAKPLLVQEVFFGNVLSANLGQAP--ARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 413
            S+  RD+ +V   RT M     G+  +V A  L +  ++    R AN  P  V +V +G V +  L Q+   AR AA+  GIP +V   T+N++C S M A+ +A  +I+ G+ D  + GG+E M + P
Sbjct:    2 SLNPRDIVVVDAVRTAMAKAKHGAFRNVRAENLSAAVMQALFDRNANLVPAEVDDVIWGCV-NQTLEQSMNIARNAAIMTGIPRTVPAQTVNRLCGSSMSALHIATANIKAGMGDFYIIGGVEHMEHVP 129          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIKB_MOUSE (3-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musculus GN=Acaa1b PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.652e-11
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = -2
Query:   48 ARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMS 404
            A DV +V   RTP+G    G     +  +L S  +   L+    KP  + ++  GNVL    G   AR A   +GIP +V  +T+N+ CSSG++AV   A  I+ G  DI +A G+ESM+
Sbjct:   35 ASDVVVVHGRRTPIGRASRGCFKDTTPDELLSAVLTAVLQDVKLKPEQLGDISVGNVLQPGAGAIMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMT 154          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIKA_RAT (3-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus norvegicus GN=Acaa1a PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.652e-11
Identity = 44/120 (36.67%), Postives = 63/120 (52.50%), Query Frame = -2
Query:   48 ARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMS 404
            A DV +V   RTP+G    G     +  +L S  +   L+    KP  + ++  GNVL    G   AR A   +GIP +V  + +N+ CSSG++AV   A  I+ G  DI +A G+ESMS
Sbjct:   35 ASDVVVVHGRRTPIGRAGRGGFKDTTPDELLSAVLTAVLQDVKLKPECLGDISVGNVLEPGAGAVMARIAQFLSGIPETVPLSAVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMS 154          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: FADA_ALISL (3-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida (strain LFI1238) GN=fadA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 43/124 (34.68%), Postives = 70/124 (56.45%), Query Frame = -2
Query:   39 RDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANAKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 401
            ++V IV   RTPMG    G      A  L +  ++  L+R  N  P  ++++++G V      G   AR A+L AG+P S+  TT+N++C S M+A+  A+++I +G  DI + GG+E M + P
Sbjct:    2 KNVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLERNPNVDPNQIEDIYWGCVQQTLEQGFNIARNASLLAGLPKSIAATTVNRLCGSSMQALHDASRAIMVGDADICIIGGVEHMGHVP 125          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: FADA_ALCBS (3-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=fadA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = -2
Query:   45 SIKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANAKPLLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSN 413
            S+  +DV IV   RTPMG    G    V A KL +  I+  + R  N    L ++V +G V  +   G   AR  ++ AG+P +    T+N++C S M+A+  A+QSI  G  D+ V GG+E M +
Sbjct:    2 SLNPKDVVIVDAVRTPMGKSRNGQFRHVRAEKLSAQLIQALMARNPNWDIQLTEDVIWGCVNQTKEQGMNIARNISMLAGLPRTSAAQTVNRLCGSSMQALHSASQSIMTGNGDVFVIGGVEHMGH 127          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: FADA_PSEAE (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa GN=fadA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.680e-11
Identity = 45/126 (35.71%), Postives = 66/126 (52.38%), Query Frame = -2
Query:   45 SIKARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAK--PLLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSN 413
            S+  RDV IV   RTPMG   G +   +  +  S  +   L   N K  P  V++V +G V  +   G   AR A+L   IP++    T++++C S M A+  AAQ+IQ G  D+ V GG+E M +
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHMGH 127          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: FADA_PSEAB (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=fadA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.680e-11
Identity = 45/126 (35.71%), Postives = 66/126 (52.38%), Query Frame = -2
Query:   45 SIKARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAK--PLLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSN 413
            S+  RDV IV   RTPMG   G +   +  +  S  +   L   N K  P  V++V +G V  +   G   AR A+L   IP++    T++++C S M A+  AAQ+IQ G  D+ V GG+E M +
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHMGH 127          
The following BLAST results are available for this feature:
BLAST of CB304644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
THIKA_MOUSE3.328e-1237.503-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musc... [more]
FADA_SACD27.415e-1236.513-ketoacyl-CoA thiolase OS=Saccharophagus degradan... [more]
THIKB_RAT1.265e-1136.673-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus n... [more]
FADA_CHRSD1.265e-1134.113-ketoacyl-CoA thiolase OS=Chromohalobacter salexi... [more]
THIKB_MOUSE1.652e-1136.673-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musc... [more]
THIKA_RAT1.652e-1136.673-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus n... [more]
FADA_ALISL2.818e-1134.683-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida ... [more]
FADA_ALCBS2.818e-1135.713-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis... [more]
FADA_PSEAE3.680e-1135.713-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEAB3.680e-1135.713-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_H05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_H05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304644 ID=CB304644; Name=CB304644; organism=Citrus sinensis; type=EST; length=477bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAGATACTTGGGCGCATTGGA
CATGCTTTCCATGCCACCCGCAACAACAATATCATTGATACCCAATTGAA
TACTCTGTGCAGCAAGCATTACAGCTTTCATCCCAGATGAACAGACTTTG
TTAATAGTGGTGCATACGACAGAATTAGGAATCCCAGCACCTAAGGCGGC
CTGTCTAGCGGGAGCCTGTCCTAAATTGGCGCTAAGAACGTTCCCAAAGA
AAACTTCTTGCACAAGGAGTGGTTTCGCGTTGGCCCTCTTAAGAGCACAT
TCGATAGCAATGGAACCCAGCTTTGTAGCTGAAACAGACGAGAGCGAGCC
AAGAAAGCCTCCCATTGGTGTACGTGCAACACCCACAATACAAACATCTC
GTGCTTTGATAGATTCTGAAGGTTCTAAAGGCACCATGCTAAATAGTATC
TTCAAAGAATCTTTAACTTTAAACCCC
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