CB304644

Overview
NameCB304644
Unique NameCB304644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: FADA_PSEA7 (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain PA7) GN=fadA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.680e-11
Identity = 45/126 (35.71%), Postives = 66/126 (52.38%), Query Frame = -2
Query:   45 SIKARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAK--PLLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSN 413
            S+  RDV IV   RTPMG   G +   +  +  S  +   L   N K  P  V++V +G V  +   G   AR A+L   IP++    T++++C S M A+  AAQ+IQ G  D+ V GG+E M +
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHMGH 127          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: FADA_HAHCH (3-ketoacyl-CoA thiolase OS=Hahella chejuensis (strain KCTC 2396) GN=fadA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.680e-11
Identity = 43/128 (33.59%), Postives = 67/128 (52.34%), Query Frame = -2
Query:   39 SIKARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRAN-AKPLLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 413
            S+  RDV ++   R+PMG    G   +V A  L +  I+    R +   P  V+++ +G V  +   G   ARQ +L   IP++    T+N++C S M A+  AAQ+I  G  D+ V GG+E M + P
Sbjct:    2 SLNPRDVVVIDCVRSPMGRAKAGCFRNVRAETLSATLIDALFDRNDKVDPAEVEDLIWGCVNQTLEQGFNVARQISLLTRIPHTSSAQTVNRLCGSAMSAIHTAAQAIMTGNGDVFVVGGVEHMGHVP 129          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIK2_ARATH (3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.198e-11
Identity = 42/127 (33.07%), Postives = 64/127 (50.39%), Query Frame = -2
Query:   39 SIKARDVCIVGVARTPM-GGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAP-ARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 413
            S+   DV IV   RTP+     G+        L +  +   +++ N  P  V ++  G VL+    +A   R AA  AG P +V   T+N+ CSSG++AV   A +I+ G  DI +  G+ESM+  P
Sbjct:   46 SLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNP 172          
The following BLAST results are available for this feature:
BLAST of CB304644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
FADA_PSEA73.680e-1135.713-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_HAHCH3.680e-1133.593-ketoacyl-CoA thiolase OS=Hahella chejuensis (str... [more]
THIK2_ARATH8.198e-1133.073-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_H05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_H05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304644 ID=CB304644; Name=CB304644; organism=Citrus sinensis; type=EST; length=477bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAGATACTTGGGCGCATTGGA
CATGCTTTCCATGCCACCCGCAACAACAATATCATTGATACCCAATTGAA
TACTCTGTGCAGCAAGCATTACAGCTTTCATCCCAGATGAACAGACTTTG
TTAATAGTGGTGCATACGACAGAATTAGGAATCCCAGCACCTAAGGCGGC
CTGTCTAGCGGGAGCCTGTCCTAAATTGGCGCTAAGAACGTTCCCAAAGA
AAACTTCTTGCACAAGGAGTGGTTTCGCGTTGGCCCTCTTAAGAGCACAT
TCGATAGCAATGGAACCCAGCTTTGTAGCTGAAACAGACGAGAGCGAGCC
AAGAAAGCCTCCCATTGGTGTACGTGCAACACCCACAATACAAACATCTC
GTGCTTTGATAGATTCTGAAGGTTCTAAAGGCACCATGCTAAATAGTATC
TTCAAAGAATCTTTAACTTTAAACCCC
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