CB304656

Overview
NameCB304656
Unique NameCB304656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_MOUSE (60S ribosomal protein L30 OS=Mus musculus GN=Rpl30 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 7.566e-27
Identity = 53/66 (80.30%), Postives = 62/66 (93.94%), Query Frame = -3
Query:  380 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 577
            KL+IL+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDII+S+P
Sbjct:   44 KLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_MACFA (60S ribosomal protein L30 OS=Macaca fascicularis GN=RPL30 PE=3 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 7.566e-27
Identity = 53/66 (80.30%), Postives = 62/66 (93.94%), Query Frame = -3
Query:  380 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 577
            KL+IL+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDII+S+P
Sbjct:   44 KLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_HUMAN (60S ribosomal protein L30 OS=Homo sapiens GN=RPL30 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 7.566e-27
Identity = 53/66 (80.30%), Postives = 62/66 (93.94%), Query Frame = -3
Query:  380 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 577
            KL+IL+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDII+S+P
Sbjct:   44 KLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_CHICK (60S ribosomal protein L30 OS=Gallus gallus GN=RPL30 PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 7.566e-27
Identity = 53/66 (80.30%), Postives = 62/66 (93.94%), Query Frame = -3
Query:  380 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 577
            KL+IL+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDII+S+P
Sbjct:   44 KLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_BOVIN (60S ribosomal protein L30 OS=Bos taurus GN=RPL30 PE=3 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 7.566e-27
Identity = 53/66 (80.30%), Postives = 62/66 (93.94%), Query Frame = -3
Query:  380 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 577
            KL+IL+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDII+S+P
Sbjct:   44 KLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_ICTPU (60S ribosomal protein L30 OS=Ictalurus punctatus GN=rpl30 PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.686e-26
Identity = 52/66 (78.79%), Postives = 62/66 (93.94%), Query Frame = -3
Query:  380 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 577
            KL+IL+NNCP LRKSEIEYYAML+K GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDII+S+P
Sbjct:   44 KLVILANNCPALRKSEIEYYAMLSKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_BRABE (60S ribosomal protein L30 OS=Branchiostoma belcheri GN=RPL30 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.427e-25
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = -3
Query:  374 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGD 577
            KLII++NN P LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKYFRV  L+I DPGDSDII+S+P +
Sbjct:   41 KLIIIANNTPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYFRVCTLAITDPGDSDIIRSMPAE 108          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_SPOFR (60S ribosomal protein L30 OS=Spodoptera frugiperda GN=RpL30 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.060e-24
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = -3
Query:  380 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 577
            KL+I++ N PPLRKSEIEYYA+LAK GVHHY+GNN++LGTACGKY+RV  L+I DPGDSDII +LP
Sbjct:   44 KLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 109          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30A_SCHPO (60S ribosomal protein L30-1 OS=Schizosaccharomyces pombe GN=rpl30a PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 6.204e-21
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = -3
Query:  392 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 577
            KLI+++ NCPPLRKSE+EYYAML+K  VHHY G N+DLGTACGK FRV  L+I D GDSDI+
Sbjct:   46 KLILIAGNCPPLRKSELEYYAMLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30B_SCHPO (60S ribosomal protein L30-2 OS=Schizosaccharomyces pombe GN=rpl30b PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.058e-20
Identity = 43/62 (69.35%), Postives = 54/62 (87.10%), Query Frame = -3
Query:  392 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 577
            KLI+++ N PPLRKSE+EYYAML++  VHHY+GNN+DLGTACGK FRV  L++ID GDSDI+
Sbjct:   54 KLILIAANAPPLRKSELEYYAMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115          
The following BLAST results are available for this feature:
BLAST of CB304656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL30_MOUSE7.566e-2780.3060S ribosomal protein L30 OS=Mus musculus GN=Rpl30... [more]
RL30_MACFA7.566e-2780.3060S ribosomal protein L30 OS=Macaca fascicularis G... [more]
RL30_HUMAN7.566e-2780.3060S ribosomal protein L30 OS=Homo sapiens GN=RPL30... [more]
RL30_CHICK7.566e-2780.3060S ribosomal protein L30 OS=Gallus gallus GN=RPL3... [more]
RL30_BOVIN7.566e-2780.3060S ribosomal protein L30 OS=Bos taurus GN=RPL30 P... [more]
RL30_ICTPU1.686e-2678.7960S ribosomal protein L30 OS=Ictalurus punctatus G... [more]
RL30_BRABE1.427e-2576.4760S ribosomal protein L30 OS=Branchiostoma belcher... [more]
RL30_SPOFR2.060e-2474.2460S ribosomal protein L30 OS=Spodoptera frugiperda... [more]
RL30A_SCHPO6.204e-2170.9760S ribosomal protein L30-1 OS=Schizosaccharomyces... [more]
RL30B_SCHPO1.058e-2069.3560S ribosomal protein L30-2 OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_A08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_A08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304656 ID=CB304656; Name=CB304656; organism=Citrus sinensis; type=EST; length=582bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCCAATACAGTAATCATC
ATCAATTTGTAAAATCTACAAATGAGGGTCAAACTCTTTACTAAAAAAAA
AGTCAATCCAAAAGCTAGATTCTAACAATGTTCTAAGTTCATAAAACTTA
AAACTCGAGTCCAACGAGAAAACAAGACATAAGCAAAGGTGAATTGATCC
AAATTGCAAAATTGAAAACATACAAAATATCCAGCATGACATTCAAAATT
GGACTATATAAGAAACTGCATCTGAAGGATGTTCAAAGGAAATTTTGAAT
TGAGAAACAGCATTCTGCAACTAAACAACCTGATCACTAAGATGCAGGTT
TTAACTCTGAATCAGGCTTAGTGGTCTCCTGGAAGTGACTTGATGATATC
AGAATCACCTGGATCAATAATGCTCAAGCAAGACACACGGAAGTACTTTC
CGCATGCTGTTCCCAAATCGACATTGTTTCCATTATAGTGGTGTACACCA
ACTTTAGCAAGCATAGCATAGTACTCAATCTCTGATTTTCTCAACGGTGG
GCAATTATTTGACAAAATAATCAACTTTCCCT
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