CB304656

Overview
NameCB304656
Unique NameCB304656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_TRYBB (60S ribosomal protein L30 OS=Trypanosoma brucei brucei GN=RPL30 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.996e-19
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = -3
Query:  395 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 577
            KL+++S NCPP+RK+EIEYY  L+K  +HHY+GNN+DLGTACG++FR   LSI D GDSDI
Sbjct:   42 KLVVISANCPPIRKAEIEYYCTLSKTPIHHYSGNNLDLGTACGRHFRACVLSITDVGDSDI 102          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_NEUCR (60S ribosomal protein L30 OS=Neurospora crassa GN=rpl-30 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.446e-19
Identity = 40/62 (64.52%), Postives = 52/62 (83.87%), Query Frame = -3
Query:  392 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 577
            KLI++S N PPLRKSE+EYY+M++K  VHHY G N++LGTACGK FR S ++I+D GDSDI+
Sbjct:   43 KLILISANTPPLRKSELEYYSMMSKTAVHHYTGTNIELGTACGKLFRCSTMAILDAGDSDIL 104          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_LEIMA (60S ribosomal protein L30 OS=Leishmania major GN=RPL30 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.294e-18
Identity = 37/61 (60.66%), Postives = 51/61 (83.61%), Query Frame = -3
Query:  395 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 577
            KL++++NNCPP+R++E+EYY  L+K  +HHY+GNN+DLGTACGK FR   LS+ + GDSDI
Sbjct:   42 KLVVIANNCPPIRRAEVEYYCTLSKTPIHHYSGNNLDLGTACGKPFRTCVLSVTNVGDSDI 102          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_DICDI (60S ribosomal protein L30 OS=Dictyostelium discoideum GN=rpl30 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.916e-18
Identity = 42/65 (64.62%), Postives = 55/65 (84.62%), Query Frame = -3
Query:  383 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 577
            KLI+L++N P +R+SEIEYYAML+K  VH Y+GNNVDLGTA G+++RVS +SI D GDSDI+ +L
Sbjct:   44 KLILLASNLPSIRRSEIEYYAMLSKTTVHLYSGNNVDLGTALGRHYRVSVMSITDAGDSDILTAL 108          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_YARLI (60S ribosomal protein L30 OS=Yarrowia lipolytica GN=RPL30 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.161e-17
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = -3
Query:  392 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 577
            KL+I++ N P LRKSEIEYYAMLAK  VHH+ G N +LGT+CG+ FRV  ++I+D GDSDI+
Sbjct:   43 KLVIIAGNTPALRKSEIEYYAMLAKCTVHHFQGGNNELGTSCGRLFRVGAVTIMDAGDSDIL 104          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_CANGA (60S ribosomal protein L30 OS=Candida glabrata GN=RPL30 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.982e-15
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = -3
Query:  383 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 577
            KLII++ N P LRKSE+EYYAML+K  V+++ G N +LGTA GK FRV  +S++D GDSDI+ +L
Sbjct:   40 KLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSVLDAGDSDILTAL 104          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_KLULA (60S ribosomal protein L30 OS=Kluyveromyces lactis GN=RPL30 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.087e-15
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = -3
Query:  383 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 577
            KLII++ N P LRKSE+EYYAML+K  V+++ G N +LGTA GK FRV  ++I+D GDSDI+ +L
Sbjct:   40 KLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVTILDAGDSDILTAL 104          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_YEAST (60S ribosomal protein L30 OS=Saccharomyces cerevisiae GN=RPL30 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = -3
Query:  383 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 577
            KLII++ N P LRKSE+EYYAML+K  V+++ G N +LGTA GK FRV  +SI++ GDSDI+ +L
Sbjct:   40 KLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTL 104          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_ASHGO (60S ribosomal protein L30 OS=Ashbya gossypii GN=RPL30 PE=3 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = -3
Query:  383 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 577
            KLII++ N P LRKSE+EYYAML+K  V+++ G N +LGTA GK FRV  ++++D GDSDI+ +L
Sbjct:   40 KLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVTVLDAGDSDILTTL 104          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30E_METTH (50S ribosomal protein L30e OS=Methanobacterium thermoautotrophicum GN=rpl30e PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.456e-11
Identity = 30/64 (46.88%), Postives = 46/64 (71.88%), Query Frame = -3
Query:  389 GKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 580
            GKL+++++N P   K +IEYYA L+++ V+ + G +V+LG+ CGK F V  L I DPGDS I++
Sbjct:   32 GKLVVMASNIPEDLKEDIEYYAKLSEIPVYTHEGTSVELGSVCGKPFTVGALLIQDPGDSTILE 95          
The following BLAST results are available for this feature:
BLAST of CB304656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL30_TRYBB1.996e-1965.5760S ribosomal protein L30 OS=Trypanosoma brucei br... [more]
RL30_NEUCR4.446e-1964.5260S ribosomal protein L30 OS=Neurospora crassa GN=... [more]
RL30_LEIMA1.294e-1860.6660S ribosomal protein L30 OS=Leishmania major GN=R... [more]
RL30_DICDI4.916e-1864.6260S ribosomal protein L30 OS=Dictyostelium discoid... [more]
RL30_YARLI4.161e-1762.9060S ribosomal protein L30 OS=Yarrowia lipolytica G... [more]
RL30_CANGA2.982e-1558.4660S ribosomal protein L30 OS=Candida glabrata GN=R... [more]
RL30_KLULA5.087e-1558.4660S ribosomal protein L30 OS=Kluyveromyces lactis ... [more]
RL30_YEAST6.644e-1558.4660S ribosomal protein L30 OS=Saccharomyces cerevis... [more]
RL30_ASHGO6.644e-1556.9260S ribosomal protein L30 OS=Ashbya gossypii GN=RP... [more]
RL30E_METTH4.456e-1146.8850S ribosomal protein L30e OS=Methanobacterium the... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_A08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_A08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304656 ID=CB304656; Name=CB304656; organism=Citrus sinensis; type=EST; length=582bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCCAATACAGTAATCATC
ATCAATTTGTAAAATCTACAAATGAGGGTCAAACTCTTTACTAAAAAAAA
AGTCAATCCAAAAGCTAGATTCTAACAATGTTCTAAGTTCATAAAACTTA
AAACTCGAGTCCAACGAGAAAACAAGACATAAGCAAAGGTGAATTGATCC
AAATTGCAAAATTGAAAACATACAAAATATCCAGCATGACATTCAAAATT
GGACTATATAAGAAACTGCATCTGAAGGATGTTCAAAGGAAATTTTGAAT
TGAGAAACAGCATTCTGCAACTAAACAACCTGATCACTAAGATGCAGGTT
TTAACTCTGAATCAGGCTTAGTGGTCTCCTGGAAGTGACTTGATGATATC
AGAATCACCTGGATCAATAATGCTCAAGCAAGACACACGGAAGTACTTTC
CGCATGCTGTTCCCAAATCGACATTGTTTCCATTATAGTGGTGTACACCA
ACTTTAGCAAGCATAGCATAGTACTCAATCTCTGATTTTCTCAACGGTGG
GCAATTATTTGACAAAATAATCAACTTTCCCT
back to top