CB304657

Overview
NameCB304657
Unique NameCB304657
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:872..1451. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: MLC2_DROME (Myosin-2 essential light chain OS=Drosophila melanogaster GN=Mlc-c PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.137e-13
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = -2
Query:  392 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 574
            E  R FDKD +G+IS+AELRH++T LGEKLTDEEV++++   + D  G INYEEFV+++M+
Sbjct:   87 EGLRHFDKDASGYISSAELRHLLTTLGEKLTDEEVEQLLANME-DQQGNINYEEFVRMVMS 146          
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CML14_ORYSJ (Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica GN=CML14 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.761e-13
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = -2
Query:  398 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 580
            L E FR FD+D NGFISAAEL   M  LG+ LT EE+  M+R+AD DGDG I+++EF  VM
Sbjct:  102 LLEVFRAFDRDGNGFISAAELARSMARLGQPLTFEELTRMMRDADTDGDGVISFKEFAAVM 162          
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CETN1_MOUSE (Centrin-1 OS=Mus musculus GN=Cetn1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.761e-13
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = -2
Query:  398 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 574
            +AFR+FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N EEF+K+M
Sbjct:  108 KAFRLFDDDETGKISFKNLKRVANELGESLTDEELQEMIDEADRDGDGEVNEEEFLKIM 166          
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALL5_HUMAN (Calmodulin-like protein 5 OS=Homo sapiens GN=CALML5 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = -2
Query:  398 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 580
            L+ AFR FD+D +G I+  ELR  M  LG+ L  EE+D MIREADVD DG++NYEEF +++
Sbjct:   83 LQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARML 143          
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CML18_ARATH (Probable calcium-binding protein CML18 OS=Arabidopsis thaliana GN=CML18 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = -2
Query:  398 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 580
            LK  FR+FD+D NG+I+AAEL H M  LG  LT EE+  MI+EAD DGDG I+++EFV+ +
Sbjct:   95 LKAIFRMFDRDGNGYITAAELAHSMAKLGHALTAEELTGMIKEADRDGDGCIDFQEFVQAI 155          
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CATR_SPESI (Caltractin (Fragment) OS=Spermatozopsis similis PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = -2
Query:  398 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 580
            + +AFR+FD DQ G I+   L+ V   LGE LTDEE+ EMI EAD DGDG+IN EEF ++M
Sbjct:   82 IMKAFRLFDDDQTGKITFKNLKRVAKELGENLTDEEIQEMIDEADRDGDGEINEEEFFRIM 142          
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CML17_ARATH (Probable calcium-binding protein CML17 OS=Arabidopsis thaliana GN=CML17 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = -2
Query:  398 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 580
            L   FR+FD D NGFI+AAEL H M  LG  LT  E+  MI+EAD DGDG+IN++EF K +
Sbjct:   96 LLRLFRIFDTDGNGFITAAELAHSMAKLGHALTVAELTGMIKEADSDGDGRINFQEFAKAI 156          
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CETN1_HUMAN (Centrin-1 OS=Homo sapiens GN=CETN1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = -2
Query:  398 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 574
            +AFR+FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N EEF+++M
Sbjct:  108 KAFRLFDDDETGKISFKNLKRVANELGENLTDEELQEMIDEADRDGDGEVNEEEFLRIM 166          
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CML12_ORYSJ (Probable calcium-binding protein CML12 OS=Oryza sativa subsp. japonica GN=CML12 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.809e-12
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = -2
Query:  398 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 580
            L EAFR FD+D NGFISAAEL   M  +G  +   E+ +M+READ DGDG I++EEF  +M
Sbjct:  176 LAEAFRAFDRDGNGFISAAELARSMARMGHPICYAELTDMMREADTDGDGLISFEEFTAIM 236          
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: TNNC_PATYE (Troponin C OS=Patinopecten yessoensis PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.363e-12
Identity = 32/63 (50.79%), Postives = 47/63 (74.60%), Query Frame = -2
Query:  392 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 580
            LKEAFRV DK++ G I    LR ++++LG++LT+EE++ MI E D DG G ++YEEF  +MM+
Sbjct:   87 LKEAFRVLDKEKKGVIKVDVLRWILSSLGDELTEEEIENMIAETDTDGSGTVDYEEFKCLMMS 149          
The following BLAST results are available for this feature:
BLAST of CB304657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
MLC2_DROME2.137e-1357.38Myosin-2 essential light chain OS=Drosophila melan... [more]
CML14_ORYSJ4.761e-1359.02Probable calcium-binding protein CML14 OS=Oryza sa... [more]
CETN1_MOUSE4.761e-1359.32Centrin-1 OS=Mus musculus GN=Cetn1 PE=2 SV=1[more]
CALL5_HUMAN6.218e-1355.74Calmodulin-like protein 5 OS=Homo sapiens GN=CALML... [more]
CML18_ARATH8.121e-1357.38Probable calcium-binding protein CML18 OS=Arabidop... [more]
CATR_SPESI8.121e-1357.38Caltractin (Fragment) OS=Spermatozopsis similis PE... [more]
CML17_ARATH1.061e-1257.38Probable calcium-binding protein CML17 OS=Arabidop... [more]
CETN1_HUMAN1.061e-1257.63Centrin-1 OS=Homo sapiens GN=CETN1 PE=2 SV=1[more]
CML12_ORYSJ1.809e-1255.74Probable calcium-binding protein CML12 OS=Oryza sa... [more]
TNNC_PATYE2.363e-1250.79Troponin C OS=Patinopecten yessoensis PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304657 ID=CB304657; Name=CB304657; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCCAAGAAACCTAAGCTGA
TAGCCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAATAAA
CATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACATTC
ATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTGCGAGT
CACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAGGCC
CATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGACTAT
CAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTTAGT
CAACCCATTTTATAAGTATTGGGGGGTTGGGGTCATTACTTGGCCATCAT
AACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACATCAG
CTTCCCTTATCATCTCATCGACTTCTTCATCAGTAAGTTTCTCTCCTAGG
TTTGTCATCACATGGCGCAGCTCAGCAGCTGAGATGAAACCATTCTGATC
CTTGTCGAAAACCCGGAAGGCCTCTTTCAGC
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