CB304657

Overview
NameCB304657
Unique NameCB304657
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:872..1451. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CML9_ARATH (Calmodulin-like protein 9 OS=Arabidopsis thaliana GN=CML9 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.979e-12
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = -2
Query:  392 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 580
            L E FRVFD+D +G IS  EL   M ++G K+T EE + M+READ+DGDG +++ EF K+M+A
Sbjct:   86 LIEVFRVFDRDGDGLISQLELGEGMKDMGMKITAEEAEHMVREADLDGDGFLSFHEFSKMMIA 148          
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CML23_ARATH (Probable calcium-binding protein CML23 OS=Arabidopsis thaliana GN=CML23 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.979e-12
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = -2
Query:  395 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 580
            LKEAF ++D D+NG ISA EL  VM NLGEK + ++   MI + D DGDG +++EEF K+MM
Sbjct:   91 LKEAFDLYDLDRNGRISANELHSVMKNLGEKCSIQDCQRMINKVDSDGDGCVDFEEFKKMMM 152          
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: TNNC1_DROME (Troponin C, isoform 1 OS=Drosophila melanogaster GN=TpnC41C PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.173e-11
Identity = 29/61 (47.54%), Postives = 47/61 (77.05%), Query Frame = -2
Query:  398 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 580
            LKEAFR++DK+ NG+I+   LR ++  L +KLT++++D MI E D DG G ++++EF++VM
Sbjct:   89 LKEAFRLYDKEGNGYITTGVLREILRELDDKLTNDDLDMMIEEIDSDGSGTVDFDEFMEVM 149          
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: MLR_PHYPO (Myosin regulatory light chain OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.173e-11
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = -2
Query:  395 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 574
            +AFR  DK+ NG I  AELR ++ NLG+ LT  EV+E+++E  V GDG INYE FV +++
Sbjct:   80 DAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDMLV 139          
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: MLC1_YEAST (Myosin light chain 1 OS=Saccharomyces cerevisiae GN=MLC1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.173e-11
Identity = 28/57 (49.12%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  404 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 574
            +AF+VFDK+  G +S  +LR+++T LGEKLTD EVDE+++  +VD +G+I+Y++F++
Sbjct:   88 KAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIE 144          
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CML15_ARATH (Probable calcium-binding protein CML15 OS=Arabidopsis thaliana GN=CML15 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.173e-11
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = -2
Query:  398 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 580
            L E F+ FD+D NGFISAAEL   M  +G+ LT +E+ EMI+EAD +GDG I++ EF  +M
Sbjct:   83 LLEIFKSFDRDGNGFISAAELAGAMAKMGQPLTYKELTEMIKEADTNGDGVISFGEFASIM 143          
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: TNNC2_CAEEL (Troponin C, isoform 2 OS=Caenorhabditis elegans GN=tnc-2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.532e-11
Identity = 27/61 (44.26%), Postives = 49/61 (80.33%), Query Frame = -2
Query:  398 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 580
            L+EAFR++DK+ NG+I+ ++LR ++  L + +++EE+DEMI E D DG G ++++EF+++M
Sbjct:   97 LREAFRLYDKEGNGYINVSDLRDILRALDDNVSEEELDEMIAEIDADGSGTVDFDEFMEMM 157          
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALGL_BOTIN (Calglandulin OS=Bothrops insularis PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.532e-11
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = -2
Query:  398 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 580
            L+ AF+VFDK+  G+I    L++V+ N GE L ++E + M++EAD DGDG I+YEEFV +M
Sbjct:   87 LRAAFKVFDKEHKGYIEWDTLKYVLMNAGEPLNEQEAELMMKEADKDGDGTIDYEEFVAMM 147          
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: MLE3_CHICK (Myosin light chain 3, skeletal muscle isoform OS=Gallus gallus PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.000e-11
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = -2
Query:  392 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 574
            E  RVFDK+ NG +  AELRHV+  LGEK+T+EEV+E+++  + D +G INYE FVK +M+
Sbjct:   90 EGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQE-DSNGCINYEAFVKHIMS 149          
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: MLE1_CHICK (Myosin light chain 1, skeletal muscle isoform OS=Gallus gallus PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.000e-11
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = -2
Query:  392 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 574
            E  RVFDK+ NG +  AELRHV+  LGEK+T+EEV+E+++  + D +G INYE FVK +M+
Sbjct:  132 EGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQE-DSNGCINYEAFVKHIMS 191          
The following BLAST results are available for this feature:
BLAST of CB304657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
CML9_ARATH8.979e-1252.38Calmodulin-like protein 9 OS=Arabidopsis thaliana ... [more]
CML23_ARATH8.979e-1254.84Probable calcium-binding protein CML23 OS=Arabidop... [more]
TNNC1_DROME1.173e-1147.54Troponin C, isoform 1 OS=Drosophila melanogaster G... [more]
MLR_PHYPO1.173e-1151.67Myosin regulatory light chain OS=Physarum polyceph... [more]
MLC1_YEAST1.173e-1149.12Myosin light chain 1 OS=Saccharomyces cerevisiae G... [more]
CML15_ARATH1.173e-1154.10Probable calcium-binding protein CML15 OS=Arabidop... [more]
TNNC2_CAEEL1.532e-1144.26Troponin C, isoform 2 OS=Caenorhabditis elegans GN... [more]
CALGL_BOTIN1.532e-1150.82Calglandulin OS=Bothrops insularis PE=2 SV=1[more]
MLE3_CHICK2.000e-1154.10Myosin light chain 3, skeletal muscle isoform OS=G... [more]
MLE1_CHICK2.000e-1154.10Myosin light chain 1, skeletal muscle isoform OS=G... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304657 ID=CB304657; Name=CB304657; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCCAAGAAACCTAAGCTGA
TAGCCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAATAAA
CATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACATTC
ATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTGCGAGT
CACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAGGCC
CATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGACTAT
CAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTTAGT
CAACCCATTTTATAAGTATTGGGGGGTTGGGGTCATTACTTGGCCATCAT
AACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACATCAG
CTTCCCTTATCATCTCATCGACTTCTTCATCAGTAAGTTTCTCTCCTAGG
TTTGTCATCACATGGCGCAGCTCAGCAGCTGAGATGAAACCATTCTGATC
CTTGTCGAAAACCCGGAAGGCCTCTTTCAGC
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