CB304657

Overview
NameCB304657
Unique NameCB304657
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:872..1451. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALM_ONCSP (Calmodulin OS=Oncorhynchus sp. GN=calm PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.755e-26
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   86 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALM_MYXGL (Calmodulin OS=Myxine glutinosa PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 3.755e-26
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   86 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALM_MOUSE (Calmodulin OS=Mus musculus GN=Calm1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.755e-26
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   86 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALM_HUMAN (Calmodulin OS=Homo sapiens GN=CALM1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.755e-26
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   86 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALM_GECJA (Calmodulin OS=Gecko japonicus GN=GekBS194P PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 3.755e-26
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   86 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALM_ELEEL (Calmodulin OS=Electrophorus electricus GN=calm PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.755e-26
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   86 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALM_DANRE (Calmodulin OS=Danio rerio GN=calm1a PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 3.755e-26
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   86 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALM_CTEID (Calmodulin OS=Ctenopharyngodon idella GN=calm PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 3.755e-26
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   86 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALM_CHICK (Calmodulin OS=Gallus gallus GN=CALM PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.755e-26
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   86 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALM_BOVIN (Calmodulin OS=Bos taurus GN=CALM PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.755e-26
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   86 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
The following BLAST results are available for this feature:
BLAST of CB304657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
CALM_ONCSP3.755e-2685.94Calmodulin OS=Oncorhynchus sp. GN=calm PE=1 SV=2[more]
CALM_MYXGL3.755e-2685.94Calmodulin OS=Myxine glutinosa PE=2 SV=3[more]
CALM_MOUSE3.755e-2685.94Calmodulin OS=Mus musculus GN=Calm1 PE=1 SV=2[more]
CALM_HUMAN3.755e-2685.94Calmodulin OS=Homo sapiens GN=CALM1 PE=1 SV=2[more]
CALM_GECJA3.755e-2685.94Calmodulin OS=Gecko japonicus GN=GekBS194P PE=2 SV... [more]
CALM_ELEEL3.755e-2685.94Calmodulin OS=Electrophorus electricus GN=calm PE=... [more]
CALM_DANRE3.755e-2685.94Calmodulin OS=Danio rerio GN=calm1a PE=2 SV=3[more]
CALM_CTEID3.755e-2685.94Calmodulin OS=Ctenopharyngodon idella GN=calm PE=2... [more]
CALM_CHICK3.755e-2685.94Calmodulin OS=Gallus gallus GN=CALM PE=1 SV=2[more]
CALM_BOVIN3.755e-2685.94Calmodulin OS=Bos taurus GN=CALM PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304657 ID=CB304657; Name=CB304657; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCCAAGAAACCTAAGCTGA
TAGCCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAATAAA
CATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACATTC
ATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTGCGAGT
CACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAGGCC
CATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGACTAT
CAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTTAGT
CAACCCATTTTATAAGTATTGGGGGGTTGGGGTCATTACTTGGCCATCAT
AACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACATCAG
CTTCCCTTATCATCTCATCGACTTCTTCATCAGTAAGTTTCTCTCCTAGG
TTTGTCATCACATGGCGCAGCTCAGCAGCTGAGATGAAACCATTCTGATC
CTTGTCGAAAACCCGGAAGGCCTCTTTCAGC
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