CB304657

Overview
NameCB304657
Unique NameCB304657
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:872..1451. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALM_DROME (Calmodulin OS=Drosophila melanogaster GN=Cam PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 6.405e-26
Identity = 55/64 (85.94%), Postives = 61/64 (95.31%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   86 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALM_APLCA (Calmodulin OS=Aplysia californica GN=CAM PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 6.405e-26
Identity = 55/64 (85.94%), Postives = 61/64 (95.31%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   86 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALMB_ARBPU (Calmodulin-beta (Fragment) OS=Arbacia punctulata PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.405e-26
Identity = 55/64 (85.94%), Postives = 61/64 (95.31%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   75 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 138
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALMA_HALRO (Calmodulin-A OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 6.405e-26
Identity = 55/64 (85.94%), Postives = 61/64 (95.31%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   86 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALM1_BRALA (Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 6.405e-26
Identity = 55/64 (85.94%), Postives = 61/64 (95.31%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   86 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALM1_BRAFL (Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 6.405e-26
Identity = 55/64 (85.94%), Postives = 61/64 (95.31%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   86 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALM_PAXIN (Calmodulin OS=Paxillus involutus GN=calA PE=2 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 8.365e-26
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            +KEAF+VFDKD NG+ISAAELRHVMTNLGEKLTD EVDEMIREADVDGDGQINY+EFVK+M++K
Sbjct:   86 IKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDTEVDEMIREADVDGDGQINYDEFVKMMLSK 149
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALM_CIOIN (Calmodulin OS=Ciona intestinalis PE=2 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 8.365e-26
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQ+NYEEFV +M  K
Sbjct:   86 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVNMMTNK 149
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALM_CAEEL (Calmodulin OS=Caenorhabditis elegans GN=cmd-1 PE=1 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 8.365e-26
Identity = 55/64 (85.94%), Postives = 60/64 (93.75%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M  K
Sbjct:   86 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTTK 149
[Close]
BLAST of CB304657 vs. ExPASy Swiss-Prot
Match: CALMB_HALRO (Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 8.365e-26
Identity = 55/64 (85.94%), Postives = 60/64 (93.75%), Query Frame = -2 
Query:  389 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 580
            ++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M  K
Sbjct:   86 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTCK 149
The following BLAST results are available for this feature:
BLAST of CB304657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
CALM_DROME6.405e-2685.94Calmodulin OS=Drosophila melanogaster GN=Cam PE=1 ... [more]
CALM_APLCA6.405e-2685.94Calmodulin OS=Aplysia californica GN=CAM PE=2 SV=2[more]
CALMB_ARBPU6.405e-2685.94Calmodulin-beta (Fragment) OS=Arbacia punctulata P... [more]
CALMA_HALRO6.405e-2685.94Calmodulin-A OS=Halocynthia roretzi PE=1 SV=2[more]
CALM1_BRALA6.405e-2685.94Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=... [more]
CALM1_BRAFL6.405e-2685.94Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2[more]
CALM_PAXIN8.365e-2685.94Calmodulin OS=Paxillus involutus GN=calA PE=2 SV=3[more]
CALM_CIOIN8.365e-2687.50Calmodulin OS=Ciona intestinalis PE=2 SV=3[more]
CALM_CAEEL8.365e-2685.94Calmodulin OS=Caenorhabditis elegans GN=cmd-1 PE=1... [more]
CALMB_HALRO8.365e-2685.94Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304657 ID=CB304657; Name=CB304657; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCCAAGAAACCTAAGCTGA
TAGCCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAATAAA
CATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACATTC
ATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTGCGAGT
CACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAGGCC
CATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGACTAT
CAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTTAGT
CAACCCATTTTATAAGTATTGGGGGGTTGGGGTCATTACTTGGCCATCAT
AACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACATCAG
CTTCCCTTATCATCTCATCGACTTCTTCATCAGTAAGTTTCTCTCCTAGG
TTTGTCATCACATGGCGCAGCTCAGCAGCTGAGATGAAACCATTCTGATC
CTTGTCGAAAACCCGGAAGGCCTCTTTCAGC
back to top