CB304662

Overview
NameCB304662
Unique NameCB304662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.478e-26
Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = -1
Query:  252 VTAPVTN-AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V AP+   AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA T+PDRQAACNCLK A  SI  +N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:   18 VIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.478e-26
Identity = 52/100 (52.00%), Postives = 72/100 (72.00%), Query Frame = -1
Query:  252 VTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            + A V  AI+CG V GSLAPC  +L  GG   PP CC GV++LN  A+T+PDRQ AC C++   +SI G+N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:   17 IVASVDAAISCGTVAGSLAPCATYLSKGG-LVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.478e-26
Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = -1
Query:  252 VTAPVTN-AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V AP+   AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA T+PDRQAACNCLK A  SI  +N N AA LP +CGV+IPYKIS  T+C+ V+
Sbjct:   18 VIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.478e-26
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = -1
Query:  252 VTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V AP   A+TCGQVT  LAPC+ +L+  GR P   CC GV+ L G+A+T+ DR+ AC CLK A  +I GI+ N AAG+P  C V+IPYKISP+TDCS V+
Sbjct:   17 VVAPHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.767e-26
Identity = 59/101 (58.42%), Postives = 75/101 (74.26%), Query Frame = -1
Query:  252 VTAPVT-NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V AP+  +AITCG+V  +LAPC+ +L+ GG  P   CC GVR+LN AA T+PDRQAACNCLK A  SI  +NAN AA LP +C V+IPYKIS +T+C+ +R
Sbjct:   16 VIAPMAESAITCGRVDTALAPCLGYLQ-GGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.666e-25
Identity = 56/100 (56.00%), Postives = 69/100 (69.00%), Query Frame = -1
Query:  252 VTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V AP   +++CG+VT  LAPC+ +L   GR P   CC GV+ L GAA+T  DR+ AC CLK A  SI GI+   AAGLP  CGV+IPYKISP+TDCS V+
Sbjct:   17 VVAPHAESLSCGEVTSGLAPCLPYLE--GRGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.842e-25
Identity = 54/98 (55.10%), Postives = 66/98 (67.35%), Query Frame = -1
Query:  255 TAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 548
            +A   +AI+CGQVT  L PC  +L  GG  PP  CCNGVR LN AA+T+PDRQ AC CLK    +   IN N A  LP +CG+SI YKI+PN DCS++
Sbjct:   19 SASYADAISCGQVTSGLVPCFGYLAAGGPVPPA-CCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.842e-25
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = -1
Query:  252 VTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            + A V  AITCG V  SL+PC+ +L  GG   PPPCC GV+ LNG A+T+PDRQ AC CL+ A +   G+N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:   17 IVASVDAAITCGTVASSLSPCLGYLSKGG-VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAK---GVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.711e-25
Identity = 55/100 (55.00%), Postives = 70/100 (70.00%), Query Frame = -1
Query:  252 VTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V AP   A++CGQV   LAPC+ +L+  GR P   CC GV+ L GAA++  DR+ AC CLK A  +I GI+   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:   17 VVAPHAEALSCGQVQSGLAPCLPYLQ--GRGPLGSCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.330e-25
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = -1
Query:  255 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 530
            AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA T+ DR+ ACNCLK    SI G+NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:   27 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
The following BLAST results are available for this feature:
BLAST of CB304662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP6_LENCU7.478e-2657.43Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP3_ARATH7.478e-2652.00Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP2_LENCU7.478e-2657.43Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP1_SOLPN7.478e-2656.00Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP_CICAR9.767e-2658.42Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP2_SOLLC1.666e-2556.00Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP_GERHY2.842e-2555.10Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP4_ARATH2.842e-2553.00Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP2_TOBAC3.711e-2555.00Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP2_ORYSI6.330e-2557.61Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_B04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_B04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304662 ID=CB304662; Name=CB304662; organism=Citrus sinensis; type=EST; length=551bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGATAATACCACAAAATAA
CTAGAATTAATCACTCAAAACACAGATCACGTTTACATATTTAATATGAT
ATTAAAAGCAAAGATACAAACATGACATGAGAGTGAGACTCACACAAGTG
GAGACTCGCTCGGACAAAGAAATTAACATATATATTCTTTATTTATTTAT
TCTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTC
ACCTGACCCTAGAGCAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTG
ACTCCACATTGACGAGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGG
GATTGATCGGTGAGCTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAG
GGGAGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGG
GGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAA
GGAGCCTGTCACCTGCCCACATGTTATGGCATTAGTCACTGGGGCAGTCA
C
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