CB304662

Overview
NameCB304662
Unique NameCB304662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304662_ssr188 microsatellite CB304662_ssr188:188..199. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:267..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.103e-24
Identity = 51/94 (54.26%), Postives = 64/94 (68.09%), Query Frame = -1
Query:  252 NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 533
            +AITCGQV   L  C+ + R GG  PP  CC GVR+LN  A+T+PDRQ ACNCLK       G+NA + AG+P +CGV+IPY I   TDC++VR
Sbjct:   21 SAITCGQVDSDLTSCLGYARKGGVIPPG-CCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.359e-24
Identity = 52/101 (51.49%), Postives = 72/101 (71.29%), Query Frame = -1
Query:  252 VTAPVTNA-ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            ++AP+  A I+CG V+G+L PC+ +L+ GG  P P CC GV+ LNGAART+ DR+AACNCLK +  SI G+     A LP +CGV +PY IS +T+C+ +R
Sbjct:   18 ISAPMAEAAISCGTVSGALVPCLTYLK-GGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.359e-24
Identity = 49/93 (52.69%), Postives = 68/93 (73.12%), Query Frame = -1
Query:  252 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 530
            AI+CGQV+ +L+PCI++ R  G  PP  CC+GV+ L GAA+++ D+QAAC C+K A     G+NA  AAG+P  CGVS+PY IS + DCS++R
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.999e-24
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = -1
Query:  252 VTAPVT--NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V  P+T   A+TCG V  ++APCI ++  GG  P   CC GV  LN  ART+PDRQ AC CL+ A R++ P +NA  AAG+P+ CGVS+P+ IS NT+C+ V+
Sbjct:   17 VAGPITANRALTCGTVNSNVAPCIGYITQGGTLPGA-CCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.999e-24
Identity = 48/92 (52.17%), Postives = 68/92 (73.91%), Query Frame = -1
Query:  255 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 530
            AI+CGQV+ +L+PCI++ R  G  PP  CC+GV+ L GAA+++ D+QAAC CLK    SI GIN    +G+P +CGVS+P+ IS +TDC++V
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.999e-24
Identity = 49/93 (52.69%), Postives = 68/93 (73.12%), Query Frame = -1
Query:  252 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 530
            AI+CGQV+ +L+PCI++ R  G  PP  CC+GV+ L GAA+++ D+QAAC C+K A     G+NA  AAG+P  CGVS+PY IS + DCS++R
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.999e-24
Identity = 49/93 (52.69%), Postives = 68/93 (73.12%), Query Frame = -1
Query:  252 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 530
            AI+CGQV+ +L+PCI++ R  G  PP  CC+GV+ L GAA+++ D+QAAC C+K A     G+NA  AAG+P  CGVS+PY IS + DCS++R
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 9.141e-24
Identity = 55/100 (55.00%), Postives = 67/100 (67.00%), Query Frame = -1
Query:  255 VTAPVTNA-ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 551
            V AP   A ITCG V+  LAPCI +L+ G       CC G+++LN AA T+PDR+ ACNCLK A  +I GIN   AAGLP  CGV IPY ISP+T+C+ V
Sbjct:   19 VAAPYAEAGITCGMVSSKLAPCIGYLKGGPL--GGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.141e-24
Identity = 54/100 (54.00%), Postives = 67/100 (67.00%), Query Frame = -1
Query:  252 VTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V AP   A+TCGQVT +LAPC+ +L   G  P   CC GV+ L G A+T+ DRQAAC CLK A  S   ++   AA LP  C V+IPYKISP+TDCS+V+
Sbjct:   17 VVAPHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.660e-23
Identity = 54/102 (52.94%), Postives = 68/102 (66.67%), Query Frame = -1
Query:  252 VTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V  P+    A++CG V+G+LA CI +L   G  P   CC GV +LN  ART+PDRQ AC CL  A  S P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:   17 VAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
The following BLAST results are available for this feature:
BLAST of CB304662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
SCA_LILLO4.103e-2454.26Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP1_LENCU5.359e-2451.49Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLT41_HORVU5.359e-2452.69Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLTPA_BRAOT6.999e-2450.49Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP3_HORVU6.999e-2452.17Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLT43_HORVU6.999e-2452.69Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLT42_HORVU6.999e-2452.69Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLTP_SPIOL9.141e-2455.00Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP2_SOLCI9.141e-2454.00Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTPB_BRAOT2.660e-2352.94Non-specific lipid-transfer protein B OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_B04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_B04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304662 ID=CB304662; Name=CB304662; organism=Citrus sinensis; type=EST; length=551bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGATAATACCACAAAATAA
CTAGAATTAATCACTCAAAACACAGATCACGTTTACATATTTAATATGAT
ATTAAAAGCAAAGATACAAACATGACATGAGAGTGAGACTCACACAAGTG
GAGACTCGCTCGGACAAAGAAATTAACATATATATTCTTTATTTATTTAT
TCTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTC
ACCTGACCCTAGAGCAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTG
ACTCCACATTGACGAGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGG
GATTGATCGGTGAGCTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAG
GGGAGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGG
GGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAA
GGAGCCTGTCACCTGCCCACATGTTATGGCATTAGTCACTGGGGCAGTCA
C
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