CB304662

Overview
NameCB304662
Unique NameCB304662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.660e-23
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = -1
Query:  255 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 527
            ++CG V   LAPCI +LR+ G  P   CCNGV++L  +A T+ DR+ AC CL  A +SI G+N  +AAGLP +CGV+IPYKISP+T+C +V
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVA-CCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.537e-23
Identity = 53/102 (51.96%), Postives = 68/102 (66.67%), Query Frame = -1
Query:  252 VTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V  P+    A++CG V+G+LA CI +L   G  P   CC+GV SLN  ART+PDRQ AC CL  A  ++P IN   AAGLP+ CGV+IPYKIS  T+C+ V+
Sbjct:   17 VAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.925e-23
Identity = 53/102 (51.96%), Postives = 68/102 (66.67%), Query Frame = -1
Query:  252 VTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V  P+    A++CG V+G+LA CI +L   G  P   CC GV +LN  ART+PDRQ AC CL  A  + P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:   17 VAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.738e-23
Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = -1
Query:  255 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNC-LKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 530
            AI+CGQV+ ++ PC+A+ R  G  P   C +GVRSLN AART+ DR+AACNC LK A   + G+NA  A+ +P +CGV +PY IS + DCSRV
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.011e-22
Identity = 54/101 (53.47%), Postives = 68/101 (67.33%), Query Frame = -1
Query:  252 VTAPVTNA-ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V AP+  A ++CG VTG LAPCI +L TGG  P   CC GV+ L  AA T+ DRQAACNCLK A  +I  +N   AA LP +C V+IPYKIS  T+C+ ++
Sbjct:   18 VIAPMAEAAVSCGTVTGDLAPCIPYL-TGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.320e-22
Identity = 48/91 (52.75%), Postives = 67/91 (73.63%), Query Frame = -1
Query:  255 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 527
            +TCGQV G+LA CI FL+ GG   PP CC GV+++  ++RT+ DR+A C+CLK A  ++ GIN N A  LP +CGV+IPYKIS +T+C+ +
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 5.016e-22
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = -1
Query:  255 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 527
            ++CG V   +A CI +LR  G  P   CCNGV++L  +A T+ DR+ AC CL  A ++I G+N  +AAGLP +CGVSIPYKISP+T+C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAA-CCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.459e-21
Identity = 54/102 (52.94%), Postives = 63/102 (61.76%), Query Frame = -1
Query:  252 VTAPVTN-AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V AP+   AI+  QV  SL PC+ ++R     P PP  C G+RSL  AAR   DRQAAC C+K     I  IN  VAAGLP QC V IPYKISP+ DC RV+
Sbjct:   19 VDAPLAQGAISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.489e-21
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = -1
Query:  255 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 530
            A+ CGQV   + PC+ +++ GG  P   CCNGVR L+  A++S DRQ  CNCLK   R I  +N N AA +P +C V++PY ISP+ DCSR+
Sbjct:   26 ALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.246e-21
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = -1
Query:  261 AITCGQVTGSLAPCIAFLRTGG-RFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSI-PGINANVAAGLPRQCGVSIPY--KISPNTDCS 530
            A++CG+V  +L PC  +L  GG   P P CCNGVR LNG   T+ DR+ AC C+K A R++ PG+NA+ AAG+PR+CG+ IPY  +I  NT C+
Sbjct:   26 ALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
The following BLAST results are available for this feature:
BLAST of CB304662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP5_VITSX2.660e-2353.85Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTP3_BRANA4.537e-2351.96Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP1_BRANA5.925e-2351.96Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP_ELECO7.738e-2353.76Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP3_LENCU1.011e-2253.47Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP1_PHAAU1.320e-2252.75Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP3_VITSX5.016e-2251.65Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP6_GOSHI1.459e-2152.94Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP1_HORVU2.489e-2148.91Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP7_ARATH4.246e-2151.06Non-specific lipid-transfer protein 7 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_B04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_B04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304662 ID=CB304662; Name=CB304662; organism=Citrus sinensis; type=EST; length=551bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGATAATACCACAAAATAA
CTAGAATTAATCACTCAAAACACAGATCACGTTTACATATTTAATATGAT
ATTAAAAGCAAAGATACAAACATGACATGAGAGTGAGACTCACACAAGTG
GAGACTCGCTCGGACAAAGAAATTAACATATATATTCTTTATTTATTTAT
TCTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTC
ACCTGACCCTAGAGCAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTG
ACTCCACATTGACGAGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGG
GATTGATCGGTGAGCTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAG
GGGAGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGG
GGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAA
GGAGCCTGTCACCTGCCCACATGTTATGGCATTAGTCACTGGGGCAGTCA
C
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