CB304673

Overview
NameCB304673
Unique NameCB304673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2117 contig Csv1_Contig2117:213..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS15A_SCHPO (40S ribosomal protein S15-A OS=Schizosaccharomyces pombe GN=rps15a PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.989e-45
Identity = 87/119 (73.11%), Postives = 99/119 (83.19%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            D+S ++LV LF ARARRR  RGL       I+KLRKAK EAP  EKP  V+THLRNMII+PEM+GS++G+YNGK FNQVEI+PEMIGHYL EFSI+YKP KHGRPGIGATHSSRFIPLK
Sbjct:   35 DLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 153          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS15_CAEEL (40S ribosomal protein S15 OS=Caenorhabditis elegans GN=rps-15 PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 5.416e-43
Identity = 83/119 (69.75%), Postives = 97/119 (81.51%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            DMS ++  KL   R RRR  RGLKRK +ALI K++KAK+ A   EKP  V+THLR+MII+PE++G +IG+YNGK FNQ EIKPEMIG YL EF+ISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   33 DMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKKAAGVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVKHGRPGIGATHSSRFIPLK 151          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS15_YEAST (40S ribosomal protein S15 OS=Saccharomyces cerevisiae GN=RPS15 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.291e-40
Identity = 79/119 (66.39%), Postives = 93/119 (78.15%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +MS ++ VKL  AR RRRF RG+  KP   +KKLR AK  AP  EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVEI+PEM+GHYL EFSI+Y PV+HGR G     +SRFIPLK
Sbjct:   27 EMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPVRHGRAG---ATTSRFIPLK 142          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS15_DICDI (40S ribosomal protein S15 OS=Dictyostelium discoideum GN=rps15 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.799e-37
Identity = 74/120 (61.67%), Postives = 90/120 (75.00%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPP-GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            D+  ++L+ L   RARR+ +R    K +  +KK R +K      GEKP  V+TH RN++IVPEMIGS+IG+YNGK FNQVE+KPEMIGHY  EFS+SYK V HGRPGIGATHSSRFIPLK
Sbjct:   25 DLKEEQLISLLRCRARRKLRRETPIKHVNFLKKCRASKAAVTQVGEKPALVKTHARNILIVPEMIGSVIGIYNGKVFNQVEVKPEMIGHYTGEFSLSYKSVNHGRPGIGATHSSRFIPLK 144          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS156_ARATH (40S ribosomal protein S15-6 OS=Arabidopsis thaliana GN=RPS15F PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.799e-37
Identity = 80/124 (64.52%), Postives = 97/124 (78.23%), Query Frame = -1
Query:  284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEK--PEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGA----THSSRFIPLK 637
            MSN +L KLF+AR RRRF RGLK++P+ LIKKLR+AK+EA    K  PE V+THLRNMIIVPEMIGS++GV+NGK FN++ IKPEMIGHYLAEFS++ K V H RP I        S+RFIPL+
Sbjct:   37 MSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEASDENKMKPEVVKTHLRNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHRPRICGCCCFRRSTRFIPLR 160          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS15_NAEGR (40S ribosomal protein S15 (Fragment) OS=Naegleria gruberi GN=RPS15 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.978e-33
Identity = 67/118 (56.78%), Postives = 89/118 (75.42%), Query Frame = -1
Query:  284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637
            M NDEL  LF++  RR   +G+ +K   LI+K +K +  AP GEKP+ V+THLR+MII+P MIG +IGVY GK +  VEIKPEM+G  L++FS++Y+PVKHG+P IGAT SS F+PLK
Sbjct:    3 MENDELKNLFTSALRRIIGKGISKKYKTLIEKAQKKRDTAPYGEKPDAVKTHLRDMIILPSMIGCVIGVYQGKDYVSVEIKPEMVGMKLSDFSLTYRPVKHGKPSIGATSSSGFVPLK 120          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METJA (30S ribosomal protein S19P OS=Methanocaldococcus jannaschii GN=rps19p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.813e-29
Identity = 59/114 (51.75%), Postives = 79/114 (69.30%), Query Frame = -1
Query:  284 ELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 625
            E  KL  AR RR   RGL  +   L  K++KA+R    G++P  +RTH R+ +I P+M+G   GVYNGK F +V++ PEMIGHYL EFS++ KPV+HG PG+GAT SS F+P+K
Sbjct:   39 EFAKLLPARQRRTLLRGLTPQQKKLAMKIKKARRLLNKGKEPRIIRTHCRDFVITPDMVGLTFGVYNGKEFVEVKVTPEMIGHYLGEFSLTRKPVQHGAPGMGATRSSMFVPIK 152          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_PYRFU (30S ribosomal protein S19P OS=Pyrococcus furiosus GN=rps19p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.915e-29
Identity = 64/119 (53.78%), Postives = 86/119 (72.27%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +MS +EL +LF AR RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+MII+PEM+G  I V+NGK F  VEIKPEMIGHYL EF+ + K V+HG PG+GAT SS F+ +K
Sbjct:   18 NMSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKYKKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKKVEHGAPGVGATRSSMFVAVK 132          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METKA (30S ribosomal protein S19P OS=Methanopyrus kandleri GN=rps19p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.295e-28
Identity = 63/118 (53.39%), Postives = 85/118 (72.03%), Query Frame = -1
Query:  284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637
            M  +E ++L  AR RR  +RGL  +   L++K+R+A+R    G+KP  +RTH R+MII+PEM+G  I VYNGK F +V+I+PEMIGHYL EF+ + K V+HG  GIGAT SS F+PLK
Sbjct:   34 MPIEEFIELLPARQRRSLKRGLPSRHKKLLRKVRRARRLLRRGKKPPVIRTHCRDMIILPEMVGLTIAVYNGKEFKEVKIEPEMIGHYLGEFAKTRKTVEHG--GIGATRSSLFVPLK 149          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_PYRAB (30S ribosomal protein S19P OS=Pyrococcus abyssi GN=rps19p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.768e-28
Identity = 64/119 (53.78%), Postives = 85/119 (71.43%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +MS +EL KL  AR RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+MI++PEM+G  I V+NGK F  VEIKPEMIGHYL EF+ + K V+HG PGIGAT SS F+ +K
Sbjct:   18 NMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGATRSSMFVAVK 132          
The following BLAST results are available for this feature:
BLAST of CB304673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15A_SCHPO1.989e-4573.1140S ribosomal protein S15-A OS=Schizosaccharomyces... [more]
RS15_CAEEL5.416e-4369.7540S ribosomal protein S15 OS=Caenorhabditis elegan... [more]
RS15_YEAST4.291e-4066.3940S ribosomal protein S15 OS=Saccharomyces cerevis... [more]
RS15_DICDI5.799e-3761.6740S ribosomal protein S15 OS=Dictyostelium discoid... [more]
RS156_ARATH5.799e-3764.5240S ribosomal protein S15-6 OS=Arabidopsis thalian... [more]
RS15_NAEGR2.978e-3356.7840S ribosomal protein S15 (Fragment) OS=Naegleria ... [more]
RS19_METJA5.813e-2951.7530S ribosomal protein S19P OS=Methanocaldococcus j... [more]
RS19_PYRFU9.915e-2953.7830S ribosomal protein S19P OS=Pyrococcus furiosus ... [more]
RS19_METKA1.295e-2853.3930S ribosomal protein S19P OS=Methanopyrus kandler... [more]
RS19_PYRAB3.768e-2853.7830S ribosomal protein S19P OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_C04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_C04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304673 ID=CB304673; Name=CB304673; organism=Citrus sinensis; type=EST; length=640bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCAAAATATGAAATAATTG
GCAGTGCCGTATGAAAACAAACACAACTTTTGGCTGACATAAGAATACAC
TCATATCCAAGCCACATAACACCTCTTTAAACTACACATTAGTTCCATTA
TCTAGATTAACAACTCAAACGCTAGTATTTAGTCCAACAACCAAAAAAAT
GTAACCACAAAAAATTTGATCAACTTCAATGTTTTCTGAAAATAACAATA
AGCTAAAATTCCAGATATCCAGCATACATCTCACTTAAGAGGAATGAACC
TTGAGGAATGGGTAGCACCAATACCAGGTCTACCGTGCTTCACAGGCTTG
TATGAGATAGAGAACTCAGCCAGGTAATGCCCAATCATTTCCGGCTTGAT
TTCAACCTGATTAAAGGTCTTGCCATTGTACACTCCAATAATGCTTCCAA
TCATTTCAGGAACAATGATCATGTTTCGCAAATGGGTGCGAACTGGTTCA
GGCTTCTCACCAGGCGGAGCCTCCCTTTTCGCCTTGCGAAGCTTCTTGAT
CAAAGCCATGGGCTTCCTCTTTAAACCCCTCTGAAACCTTCTGCGCGCAC
GTGCACTGAAGAGCTTGACGAGCTCATCATTGGACATATC
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