CB304673

Overview
NameCB304673
Unique NameCB304673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2117 contig Csv1_Contig2117:213..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_PYRCJ (30S ribosomal protein S19P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.604e-24
Identity = 59/119 (49.58%), Postives = 79/119 (66.39%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +M  DE +KL  AR RR  +RGLK +   L++K+RKAKR    G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ + V+HG PG+ AT SS  I  K
Sbjct:   41 NMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLMAQGKKVT-IKTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTRIVQHGEPGLKATRSSLHIAAK 158          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_THEAC (30S ribosomal protein S19P OS=Thermoplasma acidophilum GN=rps19p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.254e-23
Identity = 56/118 (47.46%), Postives = 78/118 (66.10%), Query Frame = -1
Query:  284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637
            MS +EL+K+  ARARR   R    +   L++KL   +         E V+TH+R++II+P  +G I+ VYNG ++ + EIKPEMIGHYL EF ++ K VKH  PG+GAT SS+F+PLK
Sbjct:   43 MSMEELIKILPARARRTLLREPNYEQKKLMEKLESDE---------EDVKTHVRDVIILPNYVGKIVEVYNGNSYFKFEIKPEMIGHYLGEFVMTRKEVKHSGPGVGATRSSKFMPLK 151          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_HALSA (30S ribosomal protein S19P OS=Halobacterium salinarium GN=rps19p PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.254e-23
Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +MS +++ +L  AR RR   RGL  +   ++ + R++  E        P+RTHLR+M ++PE +G    VY G+ F +VE++PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   25 EMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_HALS3 (30S ribosomal protein S19P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.254e-23
Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +MS +++ +L  AR RR   RGL  +   ++ + R++  E        P+RTHLR+M ++PE +G    VY G+ F +VE++PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   25 EMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_PICTO (30S ribosomal protein S19P OS=Picrophilus torridus GN=rps19p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.139e-23
Identity = 54/119 (45.38%), Postives = 81/119 (68.07%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +M  +EL+ L  ARARR + R +  +   L +KL         G+K E ++TH+R++I++P+ +G  I +YNG ++ + EIKPEMIGHYL EF+++ K VKH  PG+GAT SS+F+PLK
Sbjct:   42 NMELNELLPLLPARARRSYSRQMNHEQEKLYEKLL--------GDK-ENIKTHVRDLIVLPQFVGKTIELYNGNSYIKFEIKPEMIGHYLGEFALTRKEVKHSGPGVGATRSSKFLPLK 151          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_CALMQ (30S ribosomal protein S19P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps19p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.139e-23
Identity = 61/118 (51.69%), Postives = 77/118 (65.25%), Query Frame = -1
Query:  284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637
            M  +E +KL  AR RR  +RGL+     L++K+RKAK  A  G K  PVRTH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+I+ K V+HG PG+ AT S+  I  K
Sbjct:   71 MPMNEFIKLLPARQRRTLKRGLRPCHRQLLEKIRKAKAFAAKG-KSIPVRTHCRDMIILPEMVGLTIFVYNGITYIPVPISPWHIGHYLGEFAITTKIVQHGEPGLKATKSTLHIAAK 187          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_CENSY (30S ribosomal protein S19P OS=Cenarchaeum symbiosum GN=rps19p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.794e-23
Identity = 52/118 (44.07%), Postives = 78/118 (66.10%), Query Frame = -1
Query:  284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637
            M  D L +LF++R RR   RG+      LI++++ A+     G++  P++THLR++I++P M G  + V++GK F  VEI  EMIGHYL E+ I+ K V HG PG+GA+ SS ++PLK
Sbjct:   18 MPLDSLFRLFNSRQRRSLTRGITDGKRKLIREIKDARA----GKEGNPIKTHLRDLIVLPSMTGVTVNVFSGKEFRPVEITTEMIGHYLGEYVITNKRVSHGAPGVGASRSSLYVPLK 131          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METST (30S ribosomal protein S19P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps19p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.766e-23
Identity = 51/119 (42.86%), Postives = 77/119 (64.71%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +MS DE+++L  +R RR  +RG   +   ++ K+ K K       +P  ++TH R+MI++P M+G   G+YNG+ F +V I+PEMIG Y  EF+ +   V+HG PG+GAT SS F+PLK
Sbjct:   18 EMSLDEVIELLPSRQRRSLKRGFLPRQEKVLDKMEKVKDMKNDSGRPIVIKTHCRDMIVLPNMVGYTFGIYNGQEFVEVTIQPEMIGCYFGEFAQTRGRVQHGDPGMGATRSSMFVPLK 136          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_NITMS (30S ribosomal protein S19P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.811e-22
Identity = 51/119 (42.86%), Postives = 80/119 (67.23%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +MS ++L +LF+AR RR   RG+      LI++++ AK     G+   P++TH+R++II+P M+   + V++GK F  V I+ EMIGHYL E+ I+ + V HG PG+GA+ SS ++PLK
Sbjct:   17 NMSLEKLFQLFNARQRRSLTRGITDGKRKLIEEIKAAKA----GKLKNPIKTHVRDLIILPYMVDVTVNVFSGKEFRPVTIRTEMIGHYLGEYVITNRKVSHGAPGVGASRSSLYVPLK 131          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_NANEQ (30S ribosomal protein S19P OS=Nanoarchaeum equitans GN=rps19p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.811e-22
Identity = 59/118 (50.00%), Postives = 72/118 (61.02%), Query Frame = -1
Query:  284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637
            MS +EL K+  AR RR   R LK       KKL K    A  G+  +P++TH RN II+P M+G  + VYNGK +  V+IKPEMIGHYL EFS + K  KH  PGIGAT SS  +  K
Sbjct:   23 MSLEELAKIMPARQRRTLLRRLKFGWSDQQKKLFKKILLAKEGKYKKPIKTHARNTIILPFMVGVTVHVYNGKEYVPVQIKPEMIGHYLGEFSFTTKRPKHSAPGIGATRSSAHVSKK 140          
The following BLAST results are available for this feature:
BLAST of CB304673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_PYRCJ9.604e-2449.5830S ribosomal protein S19P OS=Pyrobaculum calidifo... [more]
RS19_THEAC1.254e-2347.4630S ribosomal protein S19P OS=Thermoplasma acidoph... [more]
RS19_HALSA1.254e-2343.7030S ribosomal protein S19P OS=Halobacterium salina... [more]
RS19_HALS31.254e-2343.7030S ribosomal protein S19P OS=Halobacterium salina... [more]
RS19_PICTO2.139e-2345.3830S ribosomal protein S19P OS=Picrophilus torridus... [more]
RS19_CALMQ2.139e-2351.6930S ribosomal protein S19P OS=Caldivirga maquiling... [more]
RS19_CENSY2.794e-2344.0730S ribosomal protein S19P OS=Cenarchaeum symbiosu... [more]
RS19_METST4.766e-2342.8630S ribosomal protein S19P OS=Methanosphaera stadt... [more]
RS19_NITMS1.811e-2242.8630S ribosomal protein S19P OS=Nitrosopumilus marit... [more]
RS19_NANEQ1.811e-2250.0030S ribosomal protein S19P OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_C04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_C04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304673 ID=CB304673; Name=CB304673; organism=Citrus sinensis; type=EST; length=640bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCAAAATATGAAATAATTG
GCAGTGCCGTATGAAAACAAACACAACTTTTGGCTGACATAAGAATACAC
TCATATCCAAGCCACATAACACCTCTTTAAACTACACATTAGTTCCATTA
TCTAGATTAACAACTCAAACGCTAGTATTTAGTCCAACAACCAAAAAAAT
GTAACCACAAAAAATTTGATCAACTTCAATGTTTTCTGAAAATAACAATA
AGCTAAAATTCCAGATATCCAGCATACATCTCACTTAAGAGGAATGAACC
TTGAGGAATGGGTAGCACCAATACCAGGTCTACCGTGCTTCACAGGCTTG
TATGAGATAGAGAACTCAGCCAGGTAATGCCCAATCATTTCCGGCTTGAT
TTCAACCTGATTAAAGGTCTTGCCATTGTACACTCCAATAATGCTTCCAA
TCATTTCAGGAACAATGATCATGTTTCGCAAATGGGTGCGAACTGGTTCA
GGCTTCTCACCAGGCGGAGCCTCCCTTTTCGCCTTGCGAAGCTTCTTGAT
CAAAGCCATGGGCTTCCTCTTTAAACCCCTCTGAAACCTTCTGCGCGCAC
GTGCACTGAAGAGCTTGACGAGCTCATCATTGGACATATC
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