CB304673
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_PYRCJ (30S ribosomal protein S19P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps19p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 9.604e-24 Identity = 59/119 (49.58%), Postives = 79/119 (66.39%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +M DE +KL AR RR +RGLK + L++K+RKAKR G+K ++TH R+MII+PEM+G I VYNG T+ V I P IGHYL EF+++ + V+HG PG+ AT SS I K Sbjct: 41 NMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLMAQGKKVT-IKTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTRIVQHGEPGLKATRSSLHIAAK 158
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_THEAC (30S ribosomal protein S19P OS=Thermoplasma acidophilum GN=rps19p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.254e-23 Identity = 56/118 (47.46%), Postives = 78/118 (66.10%), Query Frame = -1 Query: 284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637 MS +EL+K+ ARARR R + L++KL + E V+TH+R++II+P +G I+ VYNG ++ + EIKPEMIGHYL EF ++ K VKH PG+GAT SS+F+PLK Sbjct: 43 MSMEELIKILPARARRTLLREPNYEQKKLMEKLESDE---------EDVKTHVRDVIILPNYVGKIVEVYNGNSYFKFEIKPEMIGHYLGEFVMTRKEVKHSGPGVGATRSSKFMPLK 151
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_HALSA (30S ribosomal protein S19P OS=Halobacterium salinarium GN=rps19p PE=3 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.254e-23 Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +MS +++ +L AR RR RGL + ++ + R++ E P+RTHLR+M ++PE +G VY G+ F +VE++PEMIGHYL EF ++ V+HG+ GIGAT SS+F+PLK Sbjct: 25 EMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_HALS3 (30S ribosomal protein S19P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps19p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.254e-23 Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +MS +++ +L AR RR RGL + ++ + R++ E P+RTHLR+M ++PE +G VY G+ F +VE++PEMIGHYL EF ++ V+HG+ GIGAT SS+F+PLK Sbjct: 25 EMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_PICTO (30S ribosomal protein S19P OS=Picrophilus torridus GN=rps19p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.139e-23 Identity = 54/119 (45.38%), Postives = 81/119 (68.07%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +M +EL+ L ARARR + R + + L +KL G+K E ++TH+R++I++P+ +G I +YNG ++ + EIKPEMIGHYL EF+++ K VKH PG+GAT SS+F+PLK Sbjct: 42 NMELNELLPLLPARARRSYSRQMNHEQEKLYEKLL--------GDK-ENIKTHVRDLIVLPQFVGKTIELYNGNSYIKFEIKPEMIGHYLGEFALTRKEVKHSGPGVGATRSSKFLPLK 151
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_CALMQ (30S ribosomal protein S19P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps19p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.139e-23 Identity = 61/118 (51.69%), Postives = 77/118 (65.25%), Query Frame = -1 Query: 284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637 M +E +KL AR RR +RGL+ L++K+RKAK A G K PVRTH R+MII+PEM+G I VYNG T+ V I P IGHYL EF+I+ K V+HG PG+ AT S+ I K Sbjct: 71 MPMNEFIKLLPARQRRTLKRGLRPCHRQLLEKIRKAKAFAAKG-KSIPVRTHCRDMIILPEMVGLTIFVYNGITYIPVPISPWHIGHYLGEFAITTKIVQHGEPGLKATKSTLHIAAK 187
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_CENSY (30S ribosomal protein S19P OS=Cenarchaeum symbiosum GN=rps19p PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.794e-23 Identity = 52/118 (44.07%), Postives = 78/118 (66.10%), Query Frame = -1 Query: 284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637 M D L +LF++R RR RG+ LI++++ A+ G++ P++THLR++I++P M G + V++GK F VEI EMIGHYL E+ I+ K V HG PG+GA+ SS ++PLK Sbjct: 18 MPLDSLFRLFNSRQRRSLTRGITDGKRKLIREIKDARA----GKEGNPIKTHLRDLIVLPSMTGVTVNVFSGKEFRPVEITTEMIGHYLGEYVITNKRVSHGAPGVGASRSSLYVPLK 131
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METST (30S ribosomal protein S19P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps19p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.766e-23 Identity = 51/119 (42.86%), Postives = 77/119 (64.71%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +MS DE+++L +R RR +RG + ++ K+ K K +P ++TH R+MI++P M+G G+YNG+ F +V I+PEMIG Y EF+ + V+HG PG+GAT SS F+PLK Sbjct: 18 EMSLDEVIELLPSRQRRSLKRGFLPRQEKVLDKMEKVKDMKNDSGRPIVIKTHCRDMIVLPNMVGYTFGIYNGQEFVEVTIQPEMIGCYFGEFAQTRGRVQHGDPGMGATRSSMFVPLK 136
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_NITMS (30S ribosomal protein S19P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps19p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.811e-22 Identity = 51/119 (42.86%), Postives = 80/119 (67.23%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +MS ++L +LF+AR RR RG+ LI++++ AK G+ P++TH+R++II+P M+ + V++GK F V I+ EMIGHYL E+ I+ + V HG PG+GA+ SS ++PLK Sbjct: 17 NMSLEKLFQLFNARQRRSLTRGITDGKRKLIEEIKAAKA----GKLKNPIKTHVRDLIILPYMVDVTVNVFSGKEFRPVTIRTEMIGHYLGEYVITNRKVSHGAPGVGASRSSLYVPLK 131
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_NANEQ (30S ribosomal protein S19P OS=Nanoarchaeum equitans GN=rps19p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.811e-22 Identity = 59/118 (50.00%), Postives = 72/118 (61.02%), Query Frame = -1 Query: 284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637 MS +EL K+ AR RR R LK KKL K A G+ +P++TH RN II+P M+G + VYNGK + V+IKPEMIGHYL EFS + K KH PGIGAT SS + K Sbjct: 23 MSLEELAKIMPARQRRTLLRRLKFGWSDQQKKLFKKILLAKEGKYKKPIKTHARNTIILPFMVGVTVHVYNGKEYVPVQIKPEMIGHYLGEFSFTTKRPKHSAPGIGATRSSAHVSKK 140 The following BLAST results are available for this feature:
BLAST of CB304673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304673 ID=CB304673; Name=CB304673; organism=Citrus sinensis; type=EST; length=640bpback to top |