CB304673

Overview
NameCB304673
Unique NameCB304673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2117 contig Csv1_Contig2117:213..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METTP (30S ribosomal protein S19P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps19p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.811e-22
Identity = 53/118 (44.92%), Postives = 79/118 (66.95%), Query Frame = -1
Query:  284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637
            M  +E+ +L  +R RR  +RGL ++    + KLR A+  A         +THLR+ I++PEM+G ++ ++NGKTF +VEI PEMIGHYL E++++   V HG  G+GAT SS+F+PLK
Sbjct:   29 MRLEEIAELLPSRQRRTLRRGLSKEHRKFMAKLR-ARGTA---------KTHLRDAIVLPEMVGKVVEIHNGKTFQRVEIIPEMIGHYLGEYALTRARVIHGAAGVGATRSSKFVPLK 136          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METBU (30S ribosomal protein S19P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps19p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.089e-22
Identity = 54/119 (45.38%), Postives = 72/119 (60.50%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +MS ++  +L  A+ RR  +RG       ++++ R  K         E VRTH RNMII PEMIG  + VYNGK F ++EI PEMIGH   E+S +   V HG  G+GAT SS+F+PLK
Sbjct:   28 EMSFEDFAELLPAKERRSIRRGFSDSQKGVLQQFRDGK---------ESVRTHFRNMIIFPEMIGKNLEVYNGKEFVKIEIMPEMIGHRFGEYSPTRNRVSHGSAGVGATRSSKFVPLK 137          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METM7 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps19p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.002e-21
Identity = 45/119 (37.82%), Postives = 74/119 (62.18%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +M   + +++  +R RR   RG+      L+ K++KA+R    G++P  +RTH R+ +I PEMIG   G+YNGK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   43 EMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRSVVQHGSPGMGATRGSMFVPIK 161          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METM5 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps19p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.461e-21
Identity = 45/119 (37.82%), Postives = 74/119 (62.18%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +M   + +++  +R RR   RG+  K   L+ K++KA+R    G++   +RTH R+ +I PEMIG   G+YNGK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   43 EMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKEARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METM6 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps19p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.826e-21
Identity = 46/119 (38.66%), Postives = 72/119 (60.50%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +M   + +++  +R RR   RG+      L+ K++KA+R    G++P  +RTH R+ +I PEMIG   G+YNGK F  V +  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   43 EMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKDVTLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METVS (30S ribosomal protein S19P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps19p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.609e-21
Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +M   + +++  AR RR   RG+      L+ K++KA+R    G++P  +RTH R+ +I PEMIG  I +Y GK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   42 EMPIKKFIEIVPARQRRTMSRGITPNQRKLVMKIKKARRLVNRGKEPRVIRTHCRDFVITPEMIGLTISIYTGKQFKEIKLVEETLGRFLGEMAPTRGIVQHGSPGMGATRGSMFVPIK 160          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METMP (30S ribosomal protein S19P OS=Methanococcus maripaludis GN=rps19p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.938e-21
Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +M   + +++  +R RR   RG+  K   L+ K++KA+R    G+    +RTH R+ +I PEMIG   G+YNGK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   43 EMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKDARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRGVVQHGSPGMGATRGSMFVPIK 161          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METHJ (30S ribosomal protein S19P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps19p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.892e-20
Identity = 52/118 (44.07%), Postives = 74/118 (62.71%), Query Frame = -1
Query:  284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637
            MS ++L+ +  +RARR+  RG       L+  +R              +RTH R+MII+PEMIG  I +YNGK F +VE++PE + HYL EF+++ + V HG  GIGAT SS+F+PLK
Sbjct:   29 MSLEDLLPVMPSRARRKVLRGWTIGEEKLLSDIRS---------NGSRIRTHQRDMIILPEMIGREIEIYNGKEFIRVELQPESVFHYLGEFALTRRRVTHGSAGIGATRSSKFVPLK 137          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METMA (30S ribosomal protein S19P OS=Methanosarcina mazei GN=rps19p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.442e-20
Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            ++S +E  +L  +R RR  +RG       ++ + ++ K+          +RTH R+MII+PEMIG  I V+NGK F  VE++PEMIGH   EF+ +   V HG  G+GAT SS+F+PLK
Sbjct:   28 ELSLEEFAELLPSRERRSIKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGIAIEVHNGKEFVNVELQPEMIGHRFGEFAPTRSRVNHGSAGVGATRSSKFVPLK 136          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METAC (30S ribosomal protein S19P OS=Methanosarcina acetivorans GN=rps19p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.874e-19
Identity = 47/119 (39.50%), Postives = 73/119 (61.34%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            ++S +E  +L  +R RR  +RG       ++ + ++ K+          +RTH R+MII+PEMIG  I ++NGK F  V+++PEM+GH   EF+ +   V HG  G+GAT SS+F+PLK
Sbjct:   28 ELSLEEFAELLPSRERRSLKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGKTIEIHNGKGFVSVDLQPEMVGHRFGEFAPTRSRVSHGSAGVGATRSSKFVPLK 136          
The following BLAST results are available for this feature:
BLAST of CB304673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_METTP1.811e-2244.9230S ribosomal protein S19P OS=Methanosaeta thermop... [more]
RS19_METBU3.089e-2245.3830S ribosomal protein S19P OS=Methanococcoides bur... [more]
RS19_METM72.002e-2137.8230S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METM54.461e-2137.8230S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METM65.826e-2138.6630S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METVS7.609e-2137.8230S ribosomal protein S19P OS=Methanococcus vannie... [more]
RS19_METMP9.938e-2137.8230S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METHJ2.892e-2044.0730S ribosomal protein S19P OS=Methanospirillum hun... [more]
RS19_METMA6.442e-2042.0230S ribosomal protein S19P OS=Methanosarcina mazei... [more]
RS19_METAC1.874e-1939.5030S ribosomal protein S19P OS=Methanosarcina aceti... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_C04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_C04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304673 ID=CB304673; Name=CB304673; organism=Citrus sinensis; type=EST; length=640bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCAAAATATGAAATAATTG
GCAGTGCCGTATGAAAACAAACACAACTTTTGGCTGACATAAGAATACAC
TCATATCCAAGCCACATAACACCTCTTTAAACTACACATTAGTTCCATTA
TCTAGATTAACAACTCAAACGCTAGTATTTAGTCCAACAACCAAAAAAAT
GTAACCACAAAAAATTTGATCAACTTCAATGTTTTCTGAAAATAACAATA
AGCTAAAATTCCAGATATCCAGCATACATCTCACTTAAGAGGAATGAACC
TTGAGGAATGGGTAGCACCAATACCAGGTCTACCGTGCTTCACAGGCTTG
TATGAGATAGAGAACTCAGCCAGGTAATGCCCAATCATTTCCGGCTTGAT
TTCAACCTGATTAAAGGTCTTGCCATTGTACACTCCAATAATGCTTCCAA
TCATTTCAGGAACAATGATCATGTTTCGCAAATGGGTGCGAACTGGTTCA
GGCTTCTCACCAGGCGGAGCCTCCCTTTTCGCCTTGCGAAGCTTCTTGAT
CAAAGCCATGGGCTTCCTCTTTAAACCCCTCTGAAACCTTCTGCGCGCAC
GTGCACTGAAGAGCTTGACGAGCTCATCATTGGACATATC
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