CB304679

Overview
NameCB304679
Unique NameCB304679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304679_ssr174 microsatellite CB304679_ssr174:174..185. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:196..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.886e-27
Identity = 55/92 (59.78%), Postives = 68/92 (73.91%), Query Frame = -3
Query:  241 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 516
            A+TCGQV+ ++ PC+++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A R   G+N   AA +P +CGVSIPY IS +TDCSRV
Sbjct:   30 AVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.886e-27
Identity = 59/97 (60.82%), Postives = 70/97 (72.16%), Query Frame = -3
Query:  238 PXTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 528
            P   AITCGQVT +LAPC+A+LR  G  P   CC GV++L  +ARTT DRQ AC CLK A  +  GIN   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:   20 PCAEAITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.769e-27
Identity = 53/94 (56.38%), Postives = 72/94 (76.60%), Query Frame = -3
Query:  238 NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 519
            +AITC QV+ +LAPCI ++R+GG  PP  CCNG++++NG A+TTPDRQAACNCLK    S  G+N   A  LP +CGV++PYKIS +T+C+ V+
Sbjct:   23 HAITCSQVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.769e-27
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = -3
Query:  238 AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 516
            A+T GQVT SLAPCI +LR +G    PP CC G++SLN AA+TTP RQAAC C+K A     GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:   27 AVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.769e-27
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = -3
Query:  238 AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 516
            A+T GQVT SLAPCI +LR +G    PP CC G++SLN AA+TTP RQAAC C+K A     GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:   23 AVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.871e-26
Identity = 55/92 (59.78%), Postives = 69/92 (75.00%), Query Frame = -3
Query:  241 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 516
            AI+CGQV+ ++A C+++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A R   G+NA  AA +P +CGVS+PY IS +TDCSRV
Sbjct:   26 AISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.442e-26
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = -3
Query:  238 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 516
            AI+CG VTG L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNC+K A  S   +N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:   25 AISCGAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.108e-26
Identity = 54/93 (58.06%), Postives = 64/93 (68.82%), Query Frame = -3
Query:  241 NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 519
            +AI+CGQVT  L PC  +L  GG  PP  CCNGVR LN AA+TTPDRQ AC CLK    +   IN N A  LP +CG+SI YKI+PN DCS++
Sbjct:   24 DAISCGQVTSGLVPCFGYLAAGGPVPPA-CCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.068e-25
Identity = 55/93 (59.14%), Postives = 67/93 (72.04%), Query Frame = -3
Query:  238 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 516
            AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  S   +N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:   18 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.701e-25
Identity = 55/93 (59.14%), Postives = 66/93 (70.97%), Query Frame = -3
Query:  238 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 516
            AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  S   +N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
The following BLAST results are available for this feature:
BLAST of CB304679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NLTP2_SORBI2.886e-2759.78Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP1_TOBAC2.886e-2760.82Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP_PYRCO3.769e-2756.38Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP2_GOSHI3.769e-2760.64Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI3.769e-2760.64Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_SORBI1.871e-2659.78Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP5_LENCU5.442e-2659.14Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP_GERHY7.108e-2658.06Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP4_LENCU2.068e-2559.14Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP6_LENCU2.701e-2559.14Non-specific lipid-transfer protein 6 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_D03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_D03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304679 ID=CB304679; Name=CB304679; organism=Citrus sinensis; type=EST; length=608bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAATAACTAGAATTAATCAC
TCAAAACACAGATCACGTTTACATATTTAATATGATATTAAAAGCAAAGA
TACAAACATGACATGAGAGTGAGACTCACACAAGTGGAGACTCGTTCGGA
CAAAGAAATTAACATATATATTCTTTATTTATTTATTCTTCTCAGTCAAT
CATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCACCTGACCCTAGAG
CAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTGACTCCACATTGACG
AGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGGGGTTGATCGGTAAG
CTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCG
GCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGGGGTGGAGGAAAACG
CCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAAGGAGCCCGTCACCT
GCCCACATGTTATGGCATTAGTNNNTGGGGCAGTCACCAGAGTGCACAAA
AGCAAAGCACAAACAAGCTTAAGAGCAGCCATGAGGATTTTTCAGGGAGG
CTTTTGCT
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