CB304679

Overview
NameCB304679
Unique NameCB304679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304679_ssr174 microsatellite CB304679_ssr174:174..185. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:196..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.701e-25
Identity = 55/93 (59.14%), Postives = 66/93 (70.97%), Query Frame = -3
Query:  238 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 516
            AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  S   +N N AA LP +CGV+IPYKIS  T+C+ V+
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.528e-25
Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = -3
Query:  238 NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 519
            +AITCG+V  +LAPC+ +L+ GG  P   CC GVR+LN AA TTPDRQAACNCLK A  S   +NAN AA LP +C V+IPYKIS +T+C+ +R
Sbjct:   23 SAITCGRVDTALAPCLGYLQ-GGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.607e-25
Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = -3
Query:  238 NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 519
            +AITCGQV   L  C+ + R GG  PP  CC GVR+LN  A+TTPDRQ ACNCLK     + G+NA + AG+P +CGV+IPY I   TDC++VR
Sbjct:   21 SAITCGQVDSDLTSCLGYARKGGVIPPG-CCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.607e-25
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = -3
Query:  238 PXTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 528
            P   A+TCGQVT  LAPC+ +L+  GR P   CC GV++L G+A+TT DR+ AC CLK A  +  GI+ N AAG+P  C V+IPYKISP+TDCS V+
Sbjct:   20 PHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.017e-25
Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = -3
Query:  238 PXTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 528
            P   A+TCGQVT  LAPC+ +L+  GR P   CC GV+ L G+A+TT DR+ AC CLK A  +  GI+ N AAG+P  C V+IPYKISP+TDCS V+
Sbjct:   20 PHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.859e-25
Identity = 52/93 (55.91%), Postives = 69/93 (74.19%), Query Frame = -3
Query:  238 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 516
            AITCG V  SL+PC+ +L  GG   PPPCC GV+ LNG A+TTPDRQ AC CL+ A +   G+N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:   24 AITCGTVASSLSPCLGYLSKGG-VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAK---GVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.859e-25
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = -3
Query:  238 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINAN--VAAGLPRQCGVSIPYKISPNTDCSRVR 516
            A++CGQV  +L PCI ++  GG   P  CC GVRSL   A+TT DRQ+ CNCLKQA    P  NAN  +AAGLP +CGV+IPYKISP+TDC  ++
Sbjct:   30 AVSCGQVVNNLTPCINYVANGGALNPS-CCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.859e-25
Identity = 50/93 (53.76%), Postives = 68/93 (73.12%), Query Frame = -3
Query:  238 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 516
            AI+CG V GSLAPC  +L  GG   PP CC GV++LN  A+TTPDRQ AC C++   +S  G+N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:   24 AISCGTVAGSLAPCATYLSKGG-LVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.026e-24
Identity = 53/92 (57.61%), Postives = 66/92 (71.74%), Query Frame = -3
Query:  241 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 516
            AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA TT DR+ ACNCLK    S  G+NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:   27 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.026e-24
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = -3
Query:  241 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 516
            AITCGQV  ++ PC+ + R GG  P   CC+GVRSL  AA TT DR+ ACNCLK A R   G+NA  AA +P +CGVS+PY IS + DCSRV
Sbjct:   25 AITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
The following BLAST results are available for this feature:
BLAST of CB304679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NLTP2_LENCU2.701e-2559.14Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP_CICAR3.528e-2559.57Non-specific lipid-transfer protein OS=Cicer ariet... [more]
SCA_LILLO4.607e-2555.32Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP1_SOLLC4.607e-2555.67Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP1_SOLPN6.017e-2555.67Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP4_ARATH7.859e-2555.91Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP3_PRUDU7.859e-2556.84Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP3_ARATH7.859e-2553.76Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP2_ORYSI1.026e-2457.61Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTP1_ORYSJ1.026e-2457.61Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_D03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_D03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304679 ID=CB304679; Name=CB304679; organism=Citrus sinensis; type=EST; length=608bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAATAACTAGAATTAATCAC
TCAAAACACAGATCACGTTTACATATTTAATATGATATTAAAAGCAAAGA
TACAAACATGACATGAGAGTGAGACTCACACAAGTGGAGACTCGTTCGGA
CAAAGAAATTAACATATATATTCTTTATTTATTTATTCTTCTCAGTCAAT
CATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCACCTGACCCTAGAG
CAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTGACTCCACATTGACG
AGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGGGGTTGATCGGTAAG
CTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCG
GCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGGGGTGGAGGAAAACG
CCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAAGGAGCCCGTCACCT
GCCCACATGTTATGGCATTAGTNNNTGGGGCAGTCACCAGAGTGCACAAA
AGCAAAGCACAAACAAGCTTAAGAGCAGCCATGAGGATTTTTCAGGGAGG
CTTTTGCT
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