CB304679

Overview
NameCB304679
Unique NameCB304679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304679_ssr174 microsatellite CB304679_ssr174:174..185. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:196..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.632e-23
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = -3
Query:  238 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 516
            A++CG V+G+LA CI +L   G  P   CC+GV SLN  ARTTPDRQ AC CL  A  + P IN   AAGLP+ CGV+IPYKIS  T+C+ V+
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.632e-23
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = -3
Query:  238 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 516
            A++CG V+G+LA CI +L   G  P   CC GV +LN  ARTTPDRQ AC CL  A  + P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.356e-23
Identity = 51/91 (56.04%), Postives = 62/91 (68.13%), Query Frame = -3
Query:  241 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 513
            ITCG V+  LAPCI +L+ G       CC G+++LN AA TTPDR+ ACNCLK A  +  GIN   AAGLP  CGV IPY ISP+T+C+ V
Sbjct:   28 ITCGMVSSKLAPCIGYLKGGPL--GGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.356e-23
Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = -3
Query:  241 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC-LKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 516
            AI+CGQV+ ++ PC+A+ R  G  P   C +GVRSLN AARTT DR+AACNC LK A     G+NA  A+ +P +CGV +PY IS + DCSRV
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.255e-22
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = -3
Query:  241 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 513
            +TCGQV G+LA CI FL+ GG   PP CC GV+++  ++RTT DR+A C+CLK A  +  GIN N A  LP +CGV+IPYKIS +T+C+ +
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.651e-22
Identity = 51/93 (54.84%), Postives = 63/93 (67.74%), Query Frame = -3
Query:  238 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 516
            A++CG VTG LAPCI +L TGG  P   CC GV+ L  AA TT DRQAACNCLK A  +   +N   AA LP +C V+IPYKIS  T+C+ ++
Sbjct:   26 AVSCGTVTGDLAPCIPYL-TGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.062e-21
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = -3
Query:  241 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 513
            ++CG V   +A CI +LR  G  P   CCNGV++L  +A TT DR+ AC CL  A ++  G+N  +AAGLP +CGVSIPYKISP+T+C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAA-CCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.036e-21
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = -3
Query:  247 AITCGQVTGSLAPCIAFLRTGG-RFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRST-PGINANVAAGLPRQCGVSIPY--KISPNTDCS 516
            A++CG+V  +L PC  +L  GG   P P CCNGVR LNG   TT DR+ AC C+K A R+  PG+NA+ AAG+PR+CG+ IPY  +I  NT C+
Sbjct:   26 ALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.271e-21
Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = -3
Query:  238 AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 516
            A+TC  VT +L PC+ +L+  G  PPP  CC GVRSL  AA+T  DR+ ACNC+K A + T  +N  VAA L  QCGV + Y +SPN +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.271e-21
Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = -3
Query:  238 AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 516
            A+TC  VT +L PC+ +L+  G  PPP  CC GVRSL  AA+T  DR+ ACNC+K A + T  +N  VAA L  QCGV + Y +SPN +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
The following BLAST results are available for this feature:
BLAST of CB304679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NLTP3_BRANA5.632e-2355.91Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP1_BRANA5.632e-2355.91Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP_SPIOL7.356e-2356.04Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP_ELECO7.356e-2354.84Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP1_PHAAU1.255e-2253.85Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP3_LENCU3.651e-2254.84Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP3_VITSX1.062e-2151.65Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP7_ARATH4.036e-2152.13Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP_AMACA5.271e-2150.00Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP5.271e-2150.00Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_D03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_D03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304679 ID=CB304679; Name=CB304679; organism=Citrus sinensis; type=EST; length=608bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAATAACTAGAATTAATCAC
TCAAAACACAGATCACGTTTACATATTTAATATGATATTAAAAGCAAAGA
TACAAACATGACATGAGAGTGAGACTCACACAAGTGGAGACTCGTTCGGA
CAAAGAAATTAACATATATATTCTTTATTTATTTATTCTTCTCAGTCAAT
CATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCACCTGACCCTAGAG
CAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTGACTCCACATTGACG
AGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGGGGTTGATCGGTAAG
CTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCG
GCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGGGGTGGAGGAAAACG
CCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAAGGAGCCCGTCACCT
GCCCACATGTTATGGCATTAGTNNNTGGGGCAGTCACCAGAGTGCACAAA
AGCAAAGCACAAACAAGCTTAAGAGCAGCCATGAGGATTTTTCAGGGAGG
CTTTTGCT
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