CB304679

Overview
NameCB304679
Unique NameCB304679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304679_ssr174 microsatellite CB304679_ssr174:174..185. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:196..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.885e-21
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = -3
Query:  241 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 516
            AITCGQV+ +L PC A+ +  G  P   CC+GV+ L G AR+T D+QA C CLK         NA  AAG+P +CGVS+PY IS + DCS++
Sbjct:   26 AITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSV---AGAYNAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.534e-20
Identity = 50/94 (53.19%), Postives = 58/94 (61.70%), Query Frame = -3
Query:  238 AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 516
            AI+  QV  SL PC+ ++R     P PP  C G+RSL  AAR   DRQAAC C+K        IN  VAAGLP QC V IPYKISP+ DC RV+
Sbjct:   27 AISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.616e-20
Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = -3
Query:  241 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 516
            A+ CGQV   + PC+ +++ GG  P   CCNGVR L+  A+++ DRQ  CNCLK   R    +N N AA +P +C V++PY ISP+ DCSR+
Sbjct:   26 ALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.828e-20
Identity = 49/93 (52.69%), Postives = 62/93 (66.67%), Query Frame = -3
Query:  238 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRST-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 513
            ++CG V G+LA CIA+L  G       CCNGV +L   A TTPDRQ AC CL+ A ++  PG+N   AAGLP  C V+IPYKIS +T+C+ VR
Sbjct:   27 MSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.778e-19
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = -3
Query:  241 PXTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 528
            P  + I CG VT +LA C+ +L   G  P   CC GV+SL   A+TTPDR+  C CLK A +   G+N ++ A LP  CGVSIPY IS +T+C  +
Sbjct:   21 PTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.934e-19
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = -3
Query:  241 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 516
            A++CG VT S+APC++++      P   CC+GVR+LNG A ++ DR+ AC+CLK    S   +N   AA +P +CGVS+ + IS + DCS++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.934e-19
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = -3
Query:  241 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 516
            A++CG VT S+APC++++      P   CC+GVR+LNG A ++ DR+ AC+CLK    S   +N   AA +P +CGVS+ + IS + DCS++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.436e-18
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = -3
Query:  241 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 516
            AI CG V   + PC+++++ GG  P   CC+GV++L+  AR+  DRQ+ACNCLK   R    +N + A  +P +CGV++PY IS N DCSRV
Sbjct:   23 AIDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.124e-18
Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = -3
Query:  241 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 516
            AI C QV   LA C+ +L+ GG  P P CCNG+ SL  AA    DRQ ACNCLK    + PGIN + A  LP +CGV+I    S   DC+ +
Sbjct:   28 AIACPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
BLAST of CB304679 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.215e-17
Identity = 49/94 (52.13%), Postives = 59/94 (62.77%), Query Frame = -3
Query:  238 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSTPG-INANVAAGLPRQCGVSIPYKISPNTDCSRVR 516
            AI+CG VTGSL  C  +L  GG F P  CC+GV+ LN  ARTT DRQ AC C++ A R+    +NA  AA LP  C V I Y IS  T+C+ VR
Sbjct:   26 AISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
The following BLAST results are available for this feature:
BLAST of CB304679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NLTP8_HORVU6.885e-2150.00Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP6_GOSHI1.534e-2053.19Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP1_HORVU2.616e-2046.74Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP2_ARATH5.828e-2052.69Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTPC_ARATH3.778e-1946.88Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP3_ORYSJ4.934e-1943.48Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI4.934e-1943.48Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP1_WHEAT1.436e-1846.74Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTPB_ARATH7.124e-1847.83Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTP5_ARATH1.215e-1752.13Non-specific lipid-transfer protein 5 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_D03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_D03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304679 ID=CB304679; Name=CB304679; organism=Citrus sinensis; type=EST; length=608bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAATAACTAGAATTAATCAC
TCAAAACACAGATCACGTTTACATATTTAATATGATATTAAAAGCAAAGA
TACAAACATGACATGAGAGTGAGACTCACACAAGTGGAGACTCGTTCGGA
CAAAGAAATTAACATATATATTCTTTATTTATTTATTCTTCTCAGTCAAT
CATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCACCTGACCCTAGAG
CAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTGACTCCACATTGACG
AGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGGGGTTGATCGGTAAG
CTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCG
GCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGGGGTGGAGGAAAACG
CCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAAGGAGCCCGTCACCT
GCCCACATGTTATGGCATTAGTNNNTGGGGCAGTCACCAGAGTGCACAAA
AGCAAAGCACAAACAAGCTTAAGAGCAGCCATGAGGATTTTTCAGGGAGG
CTTTTGCT
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