CB304682

Overview
NameCB304682
Unique NameCB304682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8865 contig Csv1_Contig8865:85..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC_CANGA (Cytochrome c OS=Candida glabrata GN=CYC1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.970e-32
Identity = 63/100 (63.00%), Postives = 76/100 (76.00%), Query Frame = -1
Query:  263 KAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 562
            K G  +FKT+C QCHTVEKG  +K GPNL+G+FGR+SG   GYSY+ AN    V W+E  + DYL NPKKYIPGTKM F GLKK +DR DLIAYLK++T+
Sbjct:    4 KKGATLFKTRCLQCHTVEKGGPNKVGPNLHGIFGRKSGQAAGYSYTDANIKKNVTWDEDNMSDYLTNPKKYIPGTKMAFGGLKKEKDRKDLIAYLKKATS 103          
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC_TETNG (Cytochrome c OS=Tetraodon nigroviridis GN=cyc PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.492e-32
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = -1
Query:  263 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 571
            G+   G+K F  KCAQCHTVE+G  HK GPNL GLFGR++G   G+SY+ ANK+  + W E TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK ST+
Sbjct:    2 GDIAKGKKTFVQKCAQCHTVEEGGKHKTGPNLWGLFGRKTGQAEGFSYTDANKSKGIIWNEDTLLEYLENPKKYIPGTKMIFAGIKKKAERQDLIAYLKSSTS 104          
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC_KATPE (Cytochrome c OS=Katsuwonus pelamis GN=cyc PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 8.478e-32
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = -1
Query:  263 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 571
            G+   G+K F  KCAQCHTVE G  HK GPNL GLFGR++G   GYSY+ ANK+  + W E TL +YL NPKKYIPGTKM+F G+KK  +R DL+AYLK +T+
Sbjct:    2 GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNENTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS 104          
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC_RANCA (Cytochrome c OS=Rana catesbeiana PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.107e-31
Identity = 62/101 (61.39%), Postives = 75/101 (74.26%), Query Frame = -1
Query:  269 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 571
            G+ + G+KIF  KCAQCHT EKG  HK GPNL GL GR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK +
Sbjct:    2 GDVEKGKKIFVQKCAQCHTCEKGGKHKVGPNLYGLIGRKTGQAAGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLIAYLKSA 102          
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC7_YEAST (Cytochrome c iso-2 OS=Saccharomyces cerevisiae GN=CYC7 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.107e-31
Identity = 60/102 (58.82%), Postives = 77/102 (75.49%), Query Frame = -1
Query:  269 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 574
            PG+AK G  +FKT+C QCHT+E+G  +K GPNL+G+FGR SG   GYSY+ AN N  V W+E ++ +YL NPKKYIPGTKM F GLKK +DR DLI Y+ ++
Sbjct:   10 PGSAKKGATLFKTRCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDANINKNVKWDEDSMSEYLTNPKKYIPGTKMAFAGLKKEKDRNDLITYMTKA 111          
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC_MACMA (Cytochrome c OS=Macrobrachium malcolmsonii PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.889e-31
Identity = 63/102 (61.76%), Postives = 75/102 (73.53%), Query Frame = -1
Query:  266 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 571
            G+ + G+KIF  +CAQCH+ +    HK GPNLNGLFGRQ+G   GY Y+ ANK   + W+  TL  YL NPKKYIPGTKMVF GLKK  +RADLIAYLKQ+T
Sbjct:    2 GDVEKGKKIFVQRCAQCHSAQANLKHKTGPNLNGLFGRQTGQASGYVYTDANKAKGITWQADTLDVYLENPKKYIPGTKMVFAGLKKANERADLIAYLKQAT 103          
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC_DEBHA (Cytochrome c OS=Debaryomyces hansenii GN=CYC1 PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 2.467e-31
Identity = 62/102 (60.78%), Postives = 75/102 (73.53%), Query Frame = -1
Query:  266 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 571
            G+ K G  +FKT+C QCHTVE+G  HK GPNL+G+ GR SG   G+SY+ ANK   V W E+ L DYL NPKKYIPGTKM F GLKK +DR DLI+YL ++T
Sbjct:    8 GSEKKGANLFKTRCLQCHTVEEGGPHKVGPNLHGVVGRTSGQAQGFSYTDANKKKGVEWSEQNLSDYLENPKKYIPGTKMAFGGLKKAKDRNDLISYLVKAT 109          
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC_THUAA (Cytochrome c OS=Thunnus alalunga GN=cyc PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.208e-31
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = -1
Query:  263 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 571
            G+   G+K F  KCAQCHTVE G  HK GPNL GLFGR++G   GYSY+ ANK+  + W   TL +YL NPKKYIPGTKM+F G+KK  +R DL+AYLK +T+
Sbjct:    1 GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS 103          
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC_DICDI (Cytochrome c OS=Dictyostelium discoideum GN=cytC PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.374e-31
Identity = 63/105 (60.00%), Postives = 77/105 (73.33%), Query Frame = -1
Query:  266 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKN---MAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 571
            GN + G+K+FK +CAQCHT   GA +KQGPNL GLF  +S + PGY+YS  NKN     + W E+TL+DYL NPKKYIP TKM F G K  QDRAD++AYL+QST
Sbjct:    8 GNVENGDKLFKARCAQCHTTANGAPNKQGPNLYGLFFPKSRSFPGYAYSDPNKNTGKFCIMWGEQTLFDYLENPKKYIPKTKMAFAGFKSEQDRADVVAYLEQST 112          
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC1_ASCSU (Cytochrome c type-1 OS=Ascaris suum PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 9.374e-31
Identity = 60/104 (57.69%), Postives = 78/104 (75.00%), Query Frame = -1
Query:  272 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQ 583
            E P G+ ++G+K+FK +C QCH V+  A  K GP L+G+ GR+SG  PG+ YS ANKN  V W  +TL++YLLNPKKYIPGTKMVF GLKK  +RADLI Y+++
Sbjct:    3 EIPEGDYESGKKVFKQRCLQCHVVDSKAT-KTGPTLHGIIGRKSGAVPGFDYSTANKNKGVVWTRETLFEYLLNPKKYIPGTKMVFAGLKKADERADLIKYIEE 105          
The following BLAST results are available for this feature:
BLAST of CB304682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_CANGA4.970e-3263.00Cytochrome c OS=Candida glabrata GN=CYC1 PE=3 SV=1[more]
CYC_TETNG6.492e-3261.17Cytochrome c OS=Tetraodon nigroviridis GN=cyc PE=3... [more]
CYC_KATPE8.478e-3260.19Cytochrome c OS=Katsuwonus pelamis GN=cyc PE=1 SV=... [more]
CYC_RANCA1.107e-3161.39Cytochrome c OS=Rana catesbeiana PE=1 SV=2[more]
CYC7_YEAST1.107e-3158.82Cytochrome c iso-2 OS=Saccharomyces cerevisiae GN=... [more]
CYC_MACMA1.889e-3161.76Cytochrome c OS=Macrobrachium malcolmsonii PE=1 SV... [more]
CYC_DEBHA2.467e-3160.78Cytochrome c OS=Debaryomyces hansenii GN=CYC1 PE=1... [more]
CYC_THUAA4.208e-3159.22Cytochrome c OS=Thunnus alalunga GN=cyc PE=1 SV=1[more]
CYC_DICDI9.374e-3160.00Cytochrome c OS=Dictyostelium discoideum GN=cytC P... [more]
CYC1_ASCSU9.374e-3157.69Cytochrome c type-1 OS=Ascaris suum PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_D06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_D06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304682 ID=CB304682; Name=CB304682; organism=Citrus sinensis; type=EST; length=601bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTCACCCAAAATTCATGA
AATATGATTATAACCAGGAAATTCAATTGAATATTATGTTTGCCAATGAC
AGCAACCTTTTCTCAAATTAGCAATGCTCAAGTTACAAAGAACATTGCTG
AACCTTAAATGTTTAAAATTTATTGGTAAAAAACAGTACTATATCCGCAC
CGCAAAACAATCTTCAACAACTGCAAAATGGAATAGGTAAACTGACTATC
GGCAAGTTCTTATGCAGTAGATTGTTTCAAATATGCAATAAGGTCGGCAC
GATCCTGAGGCTTCTTCAATCCAGGGAATACCATCTTTGTTCCAGGAATG
TACTTCTTAGGGTTGAGCAAGTAATCATACAAAGTCTTTTCCTCCCAATT
CACAGCCATGTTCTTGTTAGCCGCAGAGTATGAGTACCCAGGTGTAGTCC
CCGATTGCCTTCCAAACAATCCGTTCAAATTAGGACCTTGTTTGTGACCG
GCGCCTTTCTCGACGGTGTGGCACTGAGCGCACTTGGTCTTGAAGATCTT
CTCTCCGGCCTTTGCATTGCCGGGAGGTGCCTCATCAAACGACGCCATTA
T
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