CB304712

Overview
NameCB304712
Unique NameCB304712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5593 contig Csv1_Contig5593:36..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_OSTOS (60S ribosomal protein L37a OS=Ostertagia ostertagi GN=rpl-37a PE=3 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 3.135e-30
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -1
Query:  244 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 516
            M KRTKK GIVGKYGTRYGASLRK +KKME+++HS+Y C FCG+ A++R AVGIW C  C K  AGGAY   T +A TVRST+RRLR+  E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKMEITQHSRYTCPFCGKDAMRRGAVGIWNCSKCKKTVAGGAYVYGTVAAATVRSTVRRLRDLKE 91          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL43_YEAST (60S ribosomal protein L43 OS=Saccharomyces cerevisiae GN=RPL43A PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.347e-30
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = -1
Query:  241 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 516
            M KRTKK GI GKYG RYG+SLR+Q+KK+E+ +H++Y C FCG+  VKR A GIW C  C K  AGGAYT++TA+A TVRSTIRRLRE  E+
Sbjct:    1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVRSTIRRLREMVEA 92          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL43_CANGA (60S ribosomal protein L43 OS=Candida glabrata GN=RPL43 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.984e-30
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = -1
Query:  241 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 516
            M KRTKK GI GKYG RYG+SLR+Q+KK+EV +H++Y C FCG+  V+R A GIW C  C K  AGGAYT++TA+A TVRSTIRRLR+  E+
Sbjct:    1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKTVRRGAAGIWSCHSCKKTVAGGAYTVSTAAAATVRSTIRRLRDMVEA 92          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_SCHMA (60S ribosomal protein L37a (Fragment) OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.191e-29
Identity = 60/90 (66.67%), Postives = 72/90 (80.00%), Query Frame = -1
Query:  241 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 510
            KRTKK GIVGKYG RYGASLRK IKK+E+S+H+KY C FCG+ ++KRKA GIW CK C KV AGGAY  +T +A T+R+ IRRLR+  ES
Sbjct:    2 KRTKKVGIVGKYGVRYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKKVVAGGAYVCSTTAATTIRAAIRRLRDAHES 91          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_DROME (60S ribosomal protein L37a OS=Drosophila melanogaster GN=RpL37A PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.032e-29
Identity = 58/91 (63.74%), Postives = 71/91 (78.02%), Query Frame = -1
Query:  244 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 516
            M KRTKK GIVGKYGTRYGASLRK +KKME+++HSKY C FCG+ ++KR  VGIW CK C +  AGGA+  +T +A +VRS +RRLRE  E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKMEITQHSKYTCSFCGKDSMKRAVVGIWSCKRCKRTVAGGAWVYSTTAAASVRSAVRRLRETKE 91          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL43B_SCHPO (60S ribosomal protein L43-B OS=Schizosaccharomyces pombe GN=rpl43b PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.005e-28
Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = -1
Query:  244 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGC--KDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 516
            MTKRTKK G+ GKYG RYGASLR+ ++K+EV +HS+Y C FCG   VKR A GIW C  K C K  AGGA+T+ TA+A + RSTIRRLRE  E
Sbjct:    1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKTLAGGAWTVTTAAATSARSTIRRLREMVE 93          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL43A_SCHPO (60S ribosomal protein L43-A OS=Schizosaccharomyces pombe GN=rpl43a PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.005e-28
Identity = 59/93 (63.44%), Postives = 70/93 (75.27%), Query Frame = -1
Query:  244 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGC--KDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 516
            MTKRTKK G+ GKYG RYGASLR+ ++K+EV +HS+Y C FCG   VKR A GIW C  K C KV AGGA+T+ TA+A + RSTIRRLRE  E
Sbjct:    1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKVLAGGAWTVTTAAATSARSTIRRLREMVE 93          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_MYXGL (60S ribosomal protein L37a (Fragment) OS=Myxine glutinosa GN=rpl37a PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.456e-27
Identity = 56/83 (67.47%), Postives = 68/83 (81.93%), Query Frame = -1
Query:  244 GIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 492
            GIVGKYGTRYGASLRK +KK+E+++HSKY C FCG+  +KR+AVGIW C  C K  AGGA+T NT+SAVTV+S IRRLRE  +
Sbjct:    2 GIVGKYGTRYGASLRKMVKKIEITQHSKYTCTFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTSSAVTVKSAIRRLREMKD 84          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_PLAF7 (60S ribosomal protein L37a OS=Plasmodium falciparum (isolate 3D7) GN=RPL37A PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.244e-27
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = -1
Query:  244 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 516
            M++RTKK G+ GKYGTRYG+SLRKQIKK+E+ +H+KY C FCG+ A KR  VGIW CK C +   GGA++L T +AV  +STI RLR+Q E
Sbjct:    1 MSRRTKKVGLTGKYGTRYGSSLRKQIKKIELMQHAKYLCTFCGKTATKRTCVGIWKCKKCKRKVCGGAWSLTTPAAVAAKSTIIRLRKQKE 91          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37L_HUMAN (Putative 60S ribosomal protein L37a-like OS=Homo sapiens GN=RPL37L PE=5 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.252e-20
Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = -1
Query:  253 MTKRTKKAG-IVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 516
            M K TKK G IV KY T +GASL K +K++E+S+H+KY C FCG+  +KR+AV I  C  C K  AG A+T NT SAV V+S IRRL+E
Sbjct:    1 MAKCTKKVGGIVSKYRTHHGASLWKMVKEIEISQHTKYTCSFCGKTKMKRRAVKIRHCNSCMKTVAGSAWTYNTTSAVMVKSAIRRLKE 89          
The following BLAST results are available for this feature:
BLAST of CB304712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL37A_OSTOS3.135e-3065.9360S ribosomal protein L37a OS=Ostertagia ostertagi... [more]
RL43_YEAST5.347e-3064.1360S ribosomal protein L43 OS=Saccharomyces cerevis... [more]
RL43_CANGA6.984e-3063.0460S ribosomal protein L43 OS=Candida glabrata GN=R... [more]
RL37A_SCHMA1.191e-2966.6760S ribosomal protein L37a (Fragment) OS=Schistoso... [more]
RL37A_DROME2.032e-2963.7460S ribosomal protein L37a OS=Drosophila melanogas... [more]
RL43B_SCHPO5.005e-2862.3760S ribosomal protein L43-B OS=Schizosaccharomyces... [more]
RL43A_SCHPO5.005e-2863.4460S ribosomal protein L43-A OS=Schizosaccharomyces... [more]
RL37A_MYXGL1.456e-2767.4760S ribosomal protein L37a (Fragment) OS=Myxine gl... [more]
RL37A_PLAF73.244e-2760.4460S ribosomal protein L37a OS=Plasmodium falciparu... [more]
RL37L_HUMAN2.252e-2056.18Putative 60S ribosomal protein L37a-like OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304712 ID=CB304712; Name=CB304712; organism=Citrus sinensis; type=EST; length=564bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAGGAAAACCCACTAGAT
AACATAATTTCATAGGAAAAATAGCGAATGAACGTCTCAAGAGTCAAAAC
ACAGCCAAAAGTTTCATGTTCCAACAACCAATTGTTTTGCATCTAGAAAT
AAAGCAACATCAAAAATGATTTAAGGTTGTATCCGAAACTAAAGATCAAA
CGACCTAAGACACGGGAGTAAGCCAATGGTGGCAAGCTCAGCTTTCAGTT
TGCTCCCTCAACCTACGGATTGTGCTCCTCACAGTCACAGCACTAGCAGT
GTTCAAAGTGTAGGCACCGCCTGCCTTGACTTTCCCACAGTCCTTGCAGC
CCCAAATGCCAACAGCTTTCCTCTTCACCGCATACTCCCCGCAAAATTCG
CAGAAATATTTGCTATGCCGACTAACCTCCATCTTCTTAATTTGCTTCCT
CAAACTGGCACCATAACGGGTACCATACTTTCCAACGATTCCAGCCTTCT
TCGTACGCTTGGTCATTGTGGCGTTGGAGCGAAGGTCTGTAGCTCTTCAA
CAAGCAGCGGCTGT
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