CB304712

Overview
NameCB304712
Unique NameCB304712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_METJA (50S ribosomal protein L37Ae OS=Methanocaldococcus jannaschii GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.411e-14
Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = -1
Query:  244 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 516
            M   TKK G  G++G RYG  +R +++ +E+    KY C  CG   +KR +  IW C  CG   AGGAYT  T +   V   IRR+ E+ E
Sbjct:    1 MFSHTKKVGPTGRFGPRYGLKIRVRVRDVEIKAKKKYKCPVCGFPKLKRASTSIWVCGKCGAKIAGGAYTPETGAGKAVMKAIRRIVERKE 91          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_DESK1 (50S ribosomal protein L37Ae OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.113e-14
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = -1
Query:  289 RTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYA-VKRKAVGIWGCKDCGKVKAGGAYTLNTASA 507
            +TK  GI G+YGTRYG++LRK+I+ +   R+S + C FCG    V R + G+W CK CG   AGGAY   T SA
Sbjct:    3 KTKVVGIAGRYGTRYGSTLRKKIRDILEKRYSPHTCPFCGHKGKVYRLSTGVWACKKCGAKWAGGAYMPKTESA 76          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_META3 (50S ribosomal protein L37Ae OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.372e-14
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = -1
Query:  253 TKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 504
            TKK G  G++G RYG  +R +++ +E+ +   Y C  CG   +KR +  IW CK CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGARYGRKVRVRVRDVEIKQKKAYKCPVCGFMKLKRISTSIWECKKCGAKMAGGAYTPETGAGKVVAKAIRRVIE 90          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_METTH (50S ribosomal protein L37Ae OS=Methanobacterium thermoautotrophicum GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.197e-13
Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = -1
Query:  259 RTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRL 507
            RTKK GI G++G RYG   ++ +KK+E     K+ C  C    VKR++ GIW C+ CG V  GGAY   T    T    I+R+
Sbjct:    3 RTKKVGITGRFGPRYGRKAKRAVKKIEEEMKRKHVCPSCDRPGVKRESRGIWKCRKCGAVFTGGAYLPVTPMGKTAARNIKRI 85          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_METS3 (50S ribosomal protein L37Ae OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.666e-13
Identity = 34/83 (40.96%), Postives = 46/83 (55.42%), Query Frame = -1
Query:  259 RTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRL 507
            RTKK GI G++G RYG   ++ +K +E +    + C  C    VKR+A GIW C+ CG V  GGAY   T  A +    IR +
Sbjct:    3 RTKKVGITGRFGARYGRKAKRSVKMIEENMKKNHVCPRCDRPYVKRQAAGIWKCRKCGAVFTGGAYVPETPMAKSAARNIRNV 85          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_PYRFU (50S ribosomal protein L37Ae OS=Pyrococcus furiosus GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.548e-13
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = -1
Query:  277 TKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVR 504
            TKK G  G++G RYG  +R+++  +E     K+ C  CG  AVKR + GIW C+ CG   AGGAY   T +   VR
Sbjct:    4 TKKVGSAGRFGARYGLKIRRRVAAVEAKMRQKHTCPVCGRKAVKRISTGIWQCQKCGATFAGGAYLPVTPAGKAVR 79          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_PYRAB (50S ribosomal protein L37Ae OS=Pyrococcus abyssi GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.939e-13
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = -1
Query:  310 TKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAY 504
            TKK G  G++G RYG  +R+++  +E     K+ C  CG  AV+R + GIW CK CG + AGGAY
Sbjct:    4 TKKVGSAGRFGPRYGLKIRRRVAAVEAKMRQKHVCPVCGRRAVRRISTGIWQCKKCGAIFAGGAY 68          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_METKA (50S ribosomal protein L37Ae OS=Methanopyrus kandleri GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.939e-13
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = -1
Query:  250 RTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQ 507
            RTKK G  G++G RYG  +R+++ ++E  +  K+ C  C + AVKR   GIW C  CG    GGAY   T +   VR  IR+  E+
Sbjct:    3 RTKKVGPAGRFGPRYGMRIRRRVAEIESVQRQKHECPVCHKRAVKRVGTGIWRCTKCGAEFTGGAYYPETEAQRIVRRAIRKALEE 88          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_PYRHO (50S ribosomal protein L37Ae OS=Pyrococcus horikoshii GN=rpl37ae PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 7.757e-13
Identity = 32/76 (42.11%), Postives = 43/76 (56.58%), Query Frame = -1
Query:  277 TKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVR 504
            TKK G  G++G RYG  +R+++  +E     K+ C  CG  AVKR + GIW C  CG + AGGAY   T +    R
Sbjct:    4 TKKVGSAGRFGARYGLKIRRRVAAVEAKMRQKHVCPVCGRRAVKRISTGIWQCTKCGAIFAGGAYLPVTPAGKVAR 79          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_METMP (50S ribosomal protein L37Ae OS=Methanococcus maripaludis GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.013e-12
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = -1
Query:  253 TKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 504
            TKK G  G++G+RYG  +R +++ +E+ ++  Y C  C    +KR    IW C+ CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGSRYGRKIRVRLRDVEIKQNKDYKCPVCAFPKLKRAGTSIWVCEKCGAKIAGGAYTPETGAGKVVTKAIRRVIE 90          
The following BLAST results are available for this feature:
BLAST of CB304712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL37A_METJA2.411e-1440.6650S ribosomal protein L37Ae OS=Methanocaldococcus ... [more]
RL37A_DESK14.113e-1450.0050S ribosomal protein L37Ae OS=Desulfurococcus kam... [more]
RL37A_META35.372e-1441.6750S ribosomal protein L37Ae OS=Methanococcus aeoli... [more]
RL37A_METTH1.197e-1342.1750S ribosomal protein L37Ae OS=Methanobacterium th... [more]
RL37A_METS32.666e-1340.9650S ribosomal protein L37Ae OS=Methanobrevibacter ... [more]
RL37A_PYRFU4.548e-1343.4250S ribosomal protein L37Ae OS=Pyrococcus furiosus... [more]
RL37A_PYRAB5.939e-1346.1550S ribosomal protein L37Ae OS=Pyrococcus abyssi G... [more]
RL37A_METKA5.939e-1340.7050S ribosomal protein L37Ae OS=Methanopyrus kandle... [more]
RL37A_PYRHO7.757e-1342.1150S ribosomal protein L37Ae OS=Pyrococcus horikosh... [more]
RL37A_METMP1.013e-1239.2950S ribosomal protein L37Ae OS=Methanococcus marip... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304712 ID=CB304712; Name=CB304712; organism=Citrus sinensis; type=EST; length=564bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAGGAAAACCCACTAGAT
AACATAATTTCATAGGAAAAATAGCGAATGAACGTCTCAAGAGTCAAAAC
ACAGCCAAAAGTTTCATGTTCCAACAACCAATTGTTTTGCATCTAGAAAT
AAAGCAACATCAAAAATGATTTAAGGTTGTATCCGAAACTAAAGATCAAA
CGACCTAAGACACGGGAGTAAGCCAATGGTGGCAAGCTCAGCTTTCAGTT
TGCTCCCTCAACCTACGGATTGTGCTCCTCACAGTCACAGCACTAGCAGT
GTTCAAAGTGTAGGCACCGCCTGCCTTGACTTTCCCACAGTCCTTGCAGC
CCCAAATGCCAACAGCTTTCCTCTTCACCGCATACTCCCCGCAAAATTCG
CAGAAATATTTGCTATGCCGACTAACCTCCATCTTCTTAATTTGCTTCCT
CAAACTGGCACCATAACGGGTACCATACTTTCCAACGATTCCAGCCTTCT
TCGTACGCTTGGTCATTGTGGCGTTGGAGCGAAGGTCTGTAGCTCTTCAA
CAAGCAGCGGCTGT
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