CB304724

Overview
NameCB304724
Unique NameCB304724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.106e-25
Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = -1
Query:  254 LVCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRV 580
            +   +++ +L+ AP  +A+TCGQV + LAPCI +       P   CC GVR+LN AA TT DRQ  C CLK+    + G++P++ A +PS+CGV IPY ISPS DC RV
Sbjct:   10 VAAVMVVALLLAAPAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.886e-25
Identity = 58/111 (52.25%), Postives = 74/111 (66.67%), Query Frame = -1
Query:  254 LVCALLLCILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRV 580
            LV  +   +L+  P T   AI+CGQV ++++PC+ + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK   G+I G+    AA++PS+CGV IPY ISPS DC  V
Sbjct:    8 LVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.886e-25
Identity = 59/116 (50.86%), Postives = 78/116 (67.24%), Query Frame = -1
Query:  251 KLVCALLLCILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK---RAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 583
            KL C LL C++V  P+T+  A++CG V ++LA CI ++  GG  PP  CCSGV++LN  A+TTPDRQ ACNC++   RA G+  G+    AA +P  CGV IPYKIS S +C  VR
Sbjct:    6 KLACLLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPA-CCSGVKNLNSIAKTTPDRQQACNCIQGAARALGS--GLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.886e-25
Identity = 58/111 (52.25%), Postives = 74/111 (66.67%), Query Frame = -1
Query:  254 LVCALLLCILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRV 580
            LV  +   +L+  P T   AI+CGQV ++++PC+ + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK   G+I G+    AA++PS+CGV IPY ISPS DC  V
Sbjct:    8 LVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.218e-25
Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = -1
Query:  251 LLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 565
            +L + + A V  AITCG V +SL+PC+ +L  GG   PPPCC+GV+ LNG A+TTPDRQ AC CL+ A    +G+ P++A+ LP +CGV IPY IS S +C  ++
Sbjct:   12 VLTVFIVASVDAAITCGTVASSLSPCLGYLSKGG-VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSA---AKGVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.488e-25
Identity = 56/108 (51.85%), Postives = 72/108 (66.67%), Query Frame = -1
Query:  254 VCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRV 577
            V A ++ +L       AI+CGQV++++A C+ + R  G  P   CCSGVRSLN AARTT DR+AACNCLK A   I G+    AA++PS+CGV +PY IS S DC RV
Sbjct:   10 VVAAVVVVLAATTSEAAISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.168e-25
Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = -1
Query:  254 LVCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRV 580
            ++C  + C++ +A   +AI+CGQVT+ L PC  +L  GG  PP  CC+GVR LN AA+TTPDRQ AC CLK        I  N A +LP +CG+ I YKI+P+ DC ++
Sbjct:    8 VLCVAVACMVFSASYADAISCGQVTSGLVPCFGYLAAGGPVPPA-CCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.168e-25
Identity = 55/107 (51.40%), Postives = 72/107 (67.29%), Query Frame = -1
Query:  254 LLLCILVTAPVTNAI-TCGQVTASLAPCIPFLRTGGRFPPP-PCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRV 568
            ++  +L T P   A+ TCGQVT +LAPC+ +LR+    P P  CC+ VR LN AARTT D++ AC CLK+    + G+  N AA LP++CGV IPYKISP+ DC RV
Sbjct:   13 VMYMVLATTPNAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.223e-24
Identity = 57/110 (51.82%), Postives = 74/110 (67.27%), Query Frame = -1
Query:  254 LVCALLLCILVTAP-VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRV 580
            ++ AL+  +L+ AP    AITCGQV +++ PC+ + R GG  P   CCSGVRSL  AA TT DR+ ACNCLK A   I+G+    AA++PS+CGV +PY IS S DC RV
Sbjct:    7 VLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.223e-24
Identity = 57/110 (51.82%), Postives = 74/110 (67.27%), Query Frame = -1
Query:  254 LVCALLLCILVTAP-VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRV 580
            ++ AL+  +L+ AP    AITCGQV +++ PC+ + R GG  P   CCSGVRSL  AA TT DR+ ACNCLK A   I+G+    AA++PS+CGV +PY IS S DC RV
Sbjct:    7 VLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
The following BLAST results are available for this feature:
BLAST of CB304724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP4_ORYSJ1.106e-2547.71Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP2_ORYSI1.886e-2552.25Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTP1_ARATH1.886e-2550.86Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLT2A_ORYSJ1.886e-2552.25Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP4_ARATH3.218e-2550.48Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP1_SORBI5.488e-2551.85Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP_GERHY7.168e-2547.71Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP_DAUCA7.168e-2551.40Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP1_ORYSJ1.223e-2451.82Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI1.223e-2451.82Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304724 ID=CB304724; Name=CB304724; organism=Citrus sinensis; type=EST; length=583bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATAATACCACAAAATAAC
TATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACA
TAAAAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACAAGGGG
AGACTCGTTCGGACAAAGAAATTAACATAAATATTCTTTATTTATTTATT
CTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCA
CCTGACCCTAAAGCAGTCGGGGCTGGGGCTGATCTTGTAAGGAATTCTGA
CTCCACATTGACTAGGAAGGGCAGCGGCAACATTAGGTTTGATGCCGCGG
ATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
GGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGCTACAGCATGGCG
GGGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCAAG
GAGGCTGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAGTCAC
CAGAATGCACAAAAGCAAAGCACAAACAAGCTT
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