CB304724

Overview
NameCB304724
Unique NameCB304724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304724_ssr187 microsatellite CB304724_ssr187:187..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:81..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.067e-20
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = -1
Query:  251 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 529
            A+TC  VT +L PC+ +L+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +C  V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.184e-19
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = -1
Query:  254 LVCALLLCILVTAP-VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRV 580
            L+ A L+ +L  AP    A+ CGQV + + PC+ +++ GG  P   CC+GVR L+  A+++ DRQ  CNCLK     I  +  N AA++PS+C V +PY ISP  DC R+
Sbjct:    8 LMAAALVLMLTAAPRAAVALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.020e-19
Identity = 42/106 (39.62%), Postives = 67/106 (63.21%), Query Frame = -1
Query:  254 ALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRV 571
            A++   +V    + A++CG VT+S+APC+ ++      P   CCSGVR+LNG A ++ DR+ AC+CLK    + R +    AA++PS+CGV + + IS S DC ++
Sbjct:   15 AVVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.020e-19
Identity = 42/106 (39.62%), Postives = 67/106 (63.21%), Query Frame = -1
Query:  254 ALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRV 571
            A++   +V    + A++CG VT+S+APC+ ++      P   CCSGVR+LNG A ++ DR+ AC+CLK    + R +    AA++PS+CGV + + IS S DC ++
Sbjct:   15 AVVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.020e-19
Identity = 54/114 (47.37%), Postives = 68/114 (59.65%), Query Frame = -1
Query:  251 KLVCALLLCILVTAPVT-NAI-TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIR-GIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 583
            KL C +L C++V  P+T NA+ +CG V  +LA CI +L  G       CC+GV +L   A TTPDRQ AC CL+ A   +  G+    AA LPS C V IPYKIS S +C  VR
Sbjct:    6 KLACMVLACMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.446e-19
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = -1
Query:  254 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRV 526
            ++CG V   +A CI +LR  G  P   CC+GV++L  +A TT DR+ AC CL  A  TI G+   +AA LP++CGV IPYKISPS +C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAA-CCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.877e-19
Identity = 56/116 (48.28%), Postives = 70/116 (60.34%), Query Frame = -1
Query:  251 KLVCALLLCILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK---RAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 583
            KL   +++C+LVTAP+ +  AI+CG VT SL  C  +L  GG F P  CCSGV+ LN  ARTT DRQ AC C++   RA G+   +    AA LP  C VRI Y IS   +C  VR
Sbjct:    6 KLSTLVIVCMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGS--RLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.309e-18
Identity = 41/105 (39.05%), Postives = 68/105 (64.76%), Query Frame = -1
Query:  263 VCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDC 577
            + A+++   +    + AITC  VT +L PC+P+LR+GG+ P P CC+G + L GA RT  DR+ AC C K A   ++ ++P++A++LP +CG+     I+P+ +C
Sbjct:   10 ILAMIVMAQLMVHPSVAITCNDVTGNLTPCLPYLRSGGK-PTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQLK-VRPDMASSLPGKCGISTSIPINPNVNC 112          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.810e-18
Identity = 47/107 (43.93%), Postives = 61/107 (57.01%), Query Frame = -1
Query:  263 KLVCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDC 583
            K++  ++  +L  A    AI C QV   LA C+P+L+ GG  P P CC+G+ SL  AA    DRQ ACNCLK    TI GI  + A  LP++CGV I    S + DC
Sbjct:   10 KMLLLVITILLGIAYHGEAIACPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDC 115          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.487e-18
Identity = 43/103 (41.75%), Postives = 64/103 (62.14%), Query Frame = -1
Query:  287 KLVCALLLCILVTAPVTN--AITCGQVTASLAPCIPFLRTGG-RFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTI-RGIKPNVAAALPSQCGVRIPY 583
            KL C + + ++   P+T   A++CG+V ++L PC  +L  GG   P P CC+GVR LNG   TT DR+ AC C+K A   +  G+  + AA +P +CG++IPY
Sbjct:    6 KLGCLVFVFVIAAGPITAKAALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPY 108          
The following BLAST results are available for this feature:
BLAST of CB304724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP1_AMAHP9.067e-2048.94Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP1_HORVU1.184e-1942.73Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP3_ORYSJ2.020e-1939.62Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI2.020e-1939.62Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP2_ARATH2.020e-1947.37Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP3_VITSX3.446e-1949.45Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP5_ARATH5.877e-1948.28Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP1_HELAN1.309e-1839.05Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTPB_ARATH3.810e-1843.93Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTP7_ARATH8.487e-1841.75Non-specific lipid-transfer protein 7 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304724 ID=CB304724; Name=CB304724; organism=Citrus sinensis; type=EST; length=583bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATAATACCACAAAATAAC
TATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACA
TAAAAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACAAGGGG
AGACTCGTTCGGACAAAGAAATTAACATAAATATTCTTTATTTATTTATT
CTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCA
CCTGACCCTAAAGCAGTCGGGGCTGGGGCTGATCTTGTAAGGAATTCTGA
CTCCACATTGACTAGGAAGGGCAGCGGCAACATTAGGTTTGATGCCGCGG
ATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
GGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGCTACAGCATGGCG
GGGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCAAG
GAGGCTGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAGTCAC
CAGAATGCACAAAAGCAAAGCACAAACAAGCTT
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