CB304728

Overview
NameCB304728
Unique NameCB304728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9435 contig Csv1_Contig9435:220..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPID_NEUCR (41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa GN=cyp-41 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.757e-20
Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = -3
Query:   30 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVSED 344
            +GGDF   +GT  ESIY  KF DE+ +LKHDRP LLSM+ A   T GSQF +T      LD K+VVFGE++ G  ++++IEN+  +  + T    I +CGE+S D
Sbjct:   78 QGGDFTAGNGTGGESIYGAKFEDENFQLKHDRPFLLSMANAGPGTNGSQFFVTTVPTPHLDGKHVVFGEVLSGKSVVRQIENLKTQGDKPTKDAVIADCGELSGD 182          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_NEUCR (Peptidyl-prolyl cis-trans isomerase B OS=Neurospora crassa GN=cpr-2 PE=3 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 8.824e-20
Identity = 46/82 (56.10%), Postives = 62/82 (75.61%), Query Frame = -3
Query:   99 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIEN 344
            +GGDF K DGT  +SIY  KFPDE+ +LKH + GLLSM+ A +DT GSQF IT      LD K+VVFGE+++G+++++KIEN
Sbjct:   94 QGGDFTKGDGTGGKSIYGDKFPDENFKLKHSKKGLLSMANAGKDTNGSQFFITTVITSWLDGKHVVFGEVLEGYDVVEKIEN 175          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_GIBZE (Peptidyl-prolyl cis-trans isomerase B OS=Gibberella zeae GN=CPR2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.824e-20
Identity = 53/103 (51.46%), Postives = 68/103 (66.02%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIEN-VGDEEGRLTVTVKIINCGEV 344
            +GGDF K DGT  +SIY  +F DE+ +LKH + GLLSM+ A RDT GSQF IT      LD K+VVFGE+++G+EI++KIEN       R    VKI   GE+
Sbjct:   94 QGGDFTKGDGTGGKSIYGDRFKDENFKLKHTKKGLLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGYEIIEKIENSKTGAADRPVEAVKIAKSGEL 196          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.824e-20
Identity = 43/102 (42.16%), Postives = 69/102 (67.65%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF   +GT  +SIY  KF DE+ +LKH  PG+L M+ A  +T GSQF IT      LD ++VVFG +V+G +++KK+E++G + G+    + +++CG++
Sbjct:   63 QGGDFTNHNGTGGKSIYGTKFEDENFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHVVFGSVVEGMDVVKKLESLGSQSGKTNKKIAVVDCGQI 164          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.152e-19
Identity = 46/102 (45.10%), Postives = 68/102 (66.67%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT  +SIY  KF DE+  LKH +PG+LSM+ A  +T GSQF I       LD K+VVFG + QG +I+KK+E+ G + G+ +  + I +CG++
Sbjct:   63 QGGDFTRHNGTGGKSIYGEKFADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKVESYGSDSGKTSKKITIADCGQL 164          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.152e-19
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = -3
Query:   36 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 344
            +GGDF + +GT  ESIY  KFPDE    K   PG+LSM+ A  +T GSQF I   A   LD K+VVFG++V+G +++K IE VG   G  +  VK+ +CG++S
Sbjct:   70 QGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQLS 172          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_ASPOR (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus oryzae GN=cpr2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 52/107 (48.60%), Postives = 74/107 (69.16%), Query Frame = -3
Query:   30 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEG-RLTVTVKIINCGEV-SED 344
            +GGDF + DGT  +SIY  KF DE+ +++H + GLLSM+ A +DT GSQF IT  A   LD ++VVFGE+++G+E+++ IENV    G +    VKI+  GE+ SED
Sbjct:   79 QGGDFTRGDGTGGKSIYGEKFKDENFKIRHTKKGLLSMANAGKDTNGSQFFITTVATPWLDGRHVVFGEVLEGYEVVEAIENVPKVPGDKPQQVVKIVKSGELESED 185          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_ARTBE (Peptidyl-prolyl cis-trans isomerase B OS=Arthroderma benhamiae GN=CPR2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.966e-19
Identity = 50/103 (48.54%), Postives = 70/103 (67.96%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDE-EGRLTVTVKIINCGEV 344
            +GGDF   DGT  +SIY  KF DE+ +L+H + G+LSM+ A +DT GSQF IT      LD K+VVFGE+++G++I+ KI+ V    + R T  VKI+ CGE+
Sbjct:   94 QGGDFTNGDGTGGKSIYGNKFEDENFKLRHTKKGVLSMANAGKDTNGSQFFITTAITAWLDGKHVVFGEVLEGYDIVDKIQVVPKGFQDRPTKDVKIVKCGEL 196          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.966e-19
Identity = 48/103 (46.60%), Postives = 67/103 (65.05%), Query Frame = -3
Query:   36 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 344
            +GGDF   +GT  ESIY  KF DE+   KH  PG+LSM+ A  +T GSQF I  +    LD K+VVFG++V+G  +++ IE VG + GR +  V I +CG++S
Sbjct:   71 QGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQIS 173          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_EMENI (Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans GN=cpr2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.567e-19
Identity = 50/103 (48.54%), Postives = 69/103 (66.99%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEV 344
            +GGDF + DGT  +SIY  KF DE+ +L+H + GLLSM+ A +DT GSQF IT      LD K+VVFGE+++G++I+ KI+NV      R    VKI+  GE+
Sbjct:   93 QGGDFTRGDGTGGKSIYGAKFKDENFKLRHTKTGLLSMANAGKDTNGSQFFITTAVTPWLDGKHVVFGEVLEGYDIVDKIQNVPKGRNDRPLKDVKIVKSGEL 195          
The following BLAST results are available for this feature:
BLAST of CB304728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
PPID_NEUCR6.757e-2047.6241 kDa peptidyl-prolyl cis-trans isomerase OS=Neur... [more]
PPIB_NEUCR8.824e-2056.10Peptidyl-prolyl cis-trans isomerase B OS=Neurospor... [more]
PPIB_GIBZE8.824e-2051.46Peptidyl-prolyl cis-trans isomerase B OS=Gibberell... [more]
PPIA_BLAGE8.824e-2042.16Peptidyl-prolyl cis-trans isomerase OS=Blattella g... [more]
PPIA_HEMPU1.152e-1945.10Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]
CYPH_MAIZE1.152e-1947.57Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
PPIB_ASPOR1.505e-1948.60Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIB_ARTBE1.966e-1948.54Peptidyl-prolyl cis-trans isomerase B OS=Arthroder... [more]
CP19A_ARATH1.966e-1946.60Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
PPIB_EMENI2.567e-1948.54Peptidyl-prolyl cis-trans isomerase B OS=Emericell... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304728 ID=CB304728; Name=CB304728; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCTCGCTAACTTCACCACA
ATTGATTATCTTCACTGTTACAGTAAGTCTCCCTTCTTCATCGCCAACAT
TTTCAATTTTTTTCAGTATCTCGTGTCCTTGCACAAGCTCCCCAAAAACT
ACATACTTCCTGTCAAGACTATGATTAGCCTTAAAGGTGATGATGAACTG
AGAACCTAGTGTGTCACGATCAGCAATAGACATGGATAAAAGGCCAGGTC
TATCATGTTTTAGCCTCGGTGACTCATCAGGAAATTTCCCCTCATAAATG
CTTTCTTCACTAGTCCCATCTCTTTTTACGAAGTCACCGCCCTTAAAACT
ACATCACAAGAAAAGCAGTCGTGACCATCAGCCCTGTGTCC
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