CB304728

Overview
NameCB304728
Unique NameCB304728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_AOTTR (Peptidyl-prolyl cis-trans isomerase A OS=Aotus trivirgatus GN=PPIA PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT  +SIY  KF DE+  LKH  PG+LSM+ A  +T GSQF I       LD K+VVFG++ +G  I++ +E  G   G+ +  + I +CG++
Sbjct:   63 QGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF   +GT  +SIY  KF DE+  LKH  PG LSM+ A  +T GSQF IT      LD K+VVFG + +G ++++ IE++G   G     + I NCG++
Sbjct:   63 QGGDFTNHNGTGGKSIYGNKFRDENFTLKHTGPGDLSMANAGPNTNGSQFFITTIKCSWLDGKHVVFGRVTEGMDVVQNIESLGSPNGTPRAKIIIDNCGQL 164          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 48/103 (46.60%), Postives = 65/103 (63.11%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVT-VKIINCGEV 344
            +GGDF   +G   ESIY  KF DE+   KH  PGLLSM+ A   T GSQF IT  A   LD K+VVFG++V+G ++++KIE    + G   ++ VKI  CG++
Sbjct:   67 QGGDFTLGNGRGGESIYGAKFADENFIHKHTTPGLLSMANAGPGTNGSQFFITTVATPHLDGKHVVFGKVVEGMDVVRKIEATQTDRGDKPLSEVKIAKCGQL 169          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYPH_UROFA (Peptidyl-prolyl cis-trans isomerase OS=Uromyces fabae GN=PIG28 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = -3
Query:   45 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGH-EILKKIENVGDEEGRLTVTVKIINCG 344
            +GGDF   +GT  ESIY  KF DE+ + KH   G+LSM+ A  +T GSQF IT      LD K+VVFG++++G+ +++K +E  G + G+ +  +KI +CG
Sbjct:   61 QGGDFTNGNGTGGESIYGKKFEDENFQKKHVERGMLSMANAGPNTNGSQFFITVTKTPWLDGKHVVFGKVIEGYDQVVKAMEKTGSQSGKTSSVLKIEDCG 161          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYP6_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = -3
Query:   33 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVSE 344
            +GGDF   DG   ESIY   F DE+  LKH   GLLSM+ A  +T GSQF ITF     LD  + VFG++V G ++L  +E  G   G  +  ++I +CGE+ +
Sbjct:   73 QGGDFTMGDGRGGESIYGRTFKDENFTLKHKGKGLLSMANAGPNTNGSQFFITFVDTPWLDGNHTVFGQIVDGSKVLDLLEQHGSRSGMPSAKIEITDCGELKD 176          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_MOUSE (Peptidyl-prolyl cis-trans isomerase A OS=Mus musculus GN=Ppia PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.193e-16
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT   SIY  KF DE+  LKH  PG+LSM+ A  +T GSQF I       LD K+VVFG++ +G  I++ +E  G   G+ +  + I +CG++
Sbjct:   63 QGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQL 164          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.193e-16
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT   SIY  KF DE+  LKH  PG+LSM+ A  +T GSQF I       LD K+VVFG++ +G  I++ +E  G   G+ +  + I +CG++
Sbjct:   63 QGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQL 164          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYP40_ARATH (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.193e-16
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = -3
Query:   33 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVG-DEEGRLTVTVKIINCGEVSE 344
            +GGD    DGT  ESIY  KF DE+  LKH+R G+LSM+ +  +T GSQF IT      LD K+VVFG + +G  +++ IE+V  +E+   +  V I +CGE+ E
Sbjct:   71 QGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEIPE 175          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYP1_BRUMA (Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.193e-16
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEV 344
            +GGDF K DGT  ESIY G F DE   +KHD P ++SM+    +T GSQF IT      L+  +VVFG++V G E++ KIE +  + + R    V I+NCGE+
Sbjct:   74 QGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.558e-16
Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = -3
Query:   78 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGR 344
            + GDF   +GT  +SIY  +FPDE+ +LKH+ PG+LSM+ A  +T GSQF I       LD K+VVFG + +G +++KKIE+ G + G+
Sbjct:  106 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGK 194          
The following BLAST results are available for this feature:
BLAST of CB304728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
PPIA_AOTTR9.132e-1742.16Peptidyl-prolyl cis-trans isomerase A OS=Aotus tri... [more]
PPIA1_RHIOR9.132e-1744.12Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus... [more]
CYPX_USEUD9.132e-1746.60Peptidyl-prolyl cis-trans isomerase OS=Unspecified... [more]
CYPH_UROFA9.132e-1743.56Peptidyl-prolyl cis-trans isomerase OS=Uromyces fa... [more]
CYP6_RHIOR9.132e-1743.27Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizop... [more]
PPIA_MOUSE1.193e-1642.16Peptidyl-prolyl cis-trans isomerase A OS=Mus muscu... [more]
PPIA_CRIGR1.193e-1642.16Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]
CYP40_ARATH1.193e-1644.76Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabi... [more]
CYP1_BRUMA1.193e-1645.63Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia ma... [more]
PPIF_BOVIN1.558e-1646.07Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304728 ID=CB304728; Name=CB304728; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCTCGCTAACTTCACCACA
ATTGATTATCTTCACTGTTACAGTAAGTCTCCCTTCTTCATCGCCAACAT
TTTCAATTTTTTTCAGTATCTCGTGTCCTTGCACAAGCTCCCCAAAAACT
ACATACTTCCTGTCAAGACTATGATTAGCCTTAAAGGTGATGATGAACTG
AGAACCTAGTGTGTCACGATCAGCAATAGACATGGATAAAAGGCCAGGTC
TATCATGTTTTAGCCTCGGTGACTCATCAGGAAATTTCCCCTCATAAATG
CTTTCTTCACTAGTCCCATCTCTTTTTACGAAGTCACCGCCCTTAAAACT
ACATCACAAGAAAAGCAGTCGTGACCATCAGCCCTGTGTCC
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