CB304728

Overview
NameCB304728
Unique NameCB304728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYP8_CAEEL (Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhabditis elegans GN=cyn-8 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.249e-15
Identity = 46/103 (44.66%), Postives = 63/103 (61.17%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEV 344
            +GGD    +GT   SIY   F DE+  LKH +P LLSM+    DT GSQF IT +    LD K+ VFGE+++G E++K IEN+    E +    V+I +CGE+
Sbjct:   74 QGGDITHGNGTGGYSIYGRTFDDENLALKHKKPYLLSMANRGPDTNGSQFFITSEEVPHLDGKHCVFGEVIKGVEVVKAIENLETGNEDKPVCKVEITHCGEM 176          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.249e-15
Identity = 45/103 (43.69%), Postives = 63/103 (61.17%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEG-RLTVTVKIINCGEV 344
            +GGDF + DGT   SIY  +F DE+ +L+H  PG LSM+ A  DT GSQF IT      LD K+VVFG++++G +++++IE      G R    V I N G +
Sbjct:   85 QGGDFTRGDGTGGRSIYGERFEDENFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHVVFGKILEGMDVVREIEATPKGAGDRPIEDVVIANAGHI 187          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_SCHMA (Peptidyl-prolyl cis-trans isomerase OS=Schistosoma mansoni PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.837e-15
Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = -3
Query:   42 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGE 344
            +GGDF   DGT  +SIY  KF DE+   KH+   L SM+ A  +T GSQF IT      LD K+VVFG++V G +++KK+E++G   G+ +  + I +CGE
Sbjct:   61 QGGDFTNGDGTGGKSIYGNKFKDENFNHKHEAFSL-SMANAGPNTNGSQFFITTVPCSWLDGKHVVFGKVVSGIDVVKKMESLGSTSGKPSKKIIIEDCGE 160          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIH_MOUSE (Peptidyl-prolyl cis-trans isomerase H OS=Mus musculus GN=Ppih PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.544e-15
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = -3
Query:  102 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIE 344
            +GGDFV  DGT   SIY G F DE+ +L+H  PGLLSM+ +   T G QF IT      LD K+VVFG+++ G  +++KIE
Sbjct:   75 QGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIE 155          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYPH_NEUCR (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Neurospora crassa GN=NCU00726 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.547e-15
Identity = 44/104 (42.31%), Postives = 64/104 (61.54%), Query Frame = -3
Query:   45 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELV--QGHEILKKIENVGDEEGRLTVTVK--IINCG 344
            +GGDF + +GT  +SIY  KF DE+   KH RPGLLSM+ A  +T GSQF +T      LD ++VVFGE+   +  +++K +E  G   G +  + K  I++CG
Sbjct:  118 QGGDFTRGNGTGGKSIYGEKFADENFAKKHVRPGLLSMANAGPNTNGSQFFVTTVPTSWLDGRHVVFGEVADDESMKVVKALEATGSSSGAIRYSKKPTIVDCG 221          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIH_RHIOR (Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus oryzae GN=cyp7 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.116e-14
Identity = 49/104 (47.12%), Postives = 62/104 (59.62%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEG-KFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVG-DEEGRLTVTVKIINCGEV 344
            +GGDF+K DGT    IY G +F DE+   KH   GLLSM+ +  ++ G QF IT  A   LD K+VVFG LV G   L+KIENV      R  + VKI  CG++
Sbjct:   75 QGGDFIKGDGTGAMCIYGGDRFADENFIEKHTGAGLLSMANSGPNSNGCQFFITCDACDFLDGKHVVFGRLVDGLLTLRKIENVATGPNNRPKLPVKITECGQM 178          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYPD_YEAST (Peptidyl-prolyl cis-trans isomerase D OS=Saccharomyces cerevisiae GN=CPR5 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.116e-14
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTV-TVKIINCGEV 344
            +GGDF  R G   +SI+   F DE+  +KHD+PG LSM+   ++T GSQF IT      LD K+VVFGE++ G +++  IENV  +   + V  V I+  GE+
Sbjct:   94 QGGDFTHRSGIGGKSIFGNTFKDENFDVKHDKPGRLSMANRGKNTNGSQFFITTVPCPWLDGKHVVFGEVLDGMDVVHYIENVKTDSRNMPVKEVIIVESGEL 196          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIH_GIBZE (Peptidyl-prolyl cis-trans isomerase H OS=Gibberella zeae GN=CYP3 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.458e-14
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGK-FPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-----GDEEGRLTVTVKIINCGEV 344
            +GGDF+  DGT    I+  K F DE+  LKHD+PGLLSM+ A  +T GSQF IT      LD K+VVFG++ +G +++KK+E       G +   L V +    CGE+
Sbjct:   77 QGGDFLNGDGTGSTCIWGFKSFEDENFTLKHDQPGLLSMANAGPNTNGSQFFITTVPTPFLDNKHVVFGKVFEGMDVVKKMEATKTGYRGKDMPNLDVVIS--QCGEM 182          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.458e-14
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = -3
Query:  102 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIE 344
            +GGDF + DGT   SIY  KF DE+ +LKH   G LSM+ A  DT GSQF IT      LD ++VVFG++++G ++++KIE
Sbjct:   88 QGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIE 168          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.904e-14
Identity = 45/102 (44.12%), Postives = 61/102 (59.80%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGD    +G   +SIY  KF DE+   KHD+ GLLSM+ A  +T GSQF IT      LD K+VVFGE+ +G +I+K IE+ G   G+    + I   GE+
Sbjct:   81 QGGDTDLTNGFGGKSIYGSKFADENFVKKHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGTASGKPRAEIVIEEAGEL 182          
The following BLAST results are available for this feature:
BLAST of CB304728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
CYP8_CAEEL2.249e-1544.66Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhab... [more]
CYP6_CAEEL2.249e-1543.69Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
PPIA_SCHMA3.837e-1544.55Peptidyl-prolyl cis-trans isomerase OS=Schistosoma... [more]
PPIH_MOUSE6.544e-1549.38Peptidyl-prolyl cis-trans isomerase H OS=Mus muscu... [more]
CYPH_NEUCR8.547e-1542.31Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIH_RHIOR1.116e-1447.12Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus ... [more]
CYPD_YEAST1.116e-1442.72Peptidyl-prolyl cis-trans isomerase D OS=Saccharom... [more]
PPIH_GIBZE1.458e-1443.52Peptidyl-prolyl cis-trans isomerase H OS=Gibberell... [more]
CYP5_CAEEL1.458e-1449.38Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
CYPC_YEAST1.904e-1444.12Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304728 ID=CB304728; Name=CB304728; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCTCGCTAACTTCACCACA
ATTGATTATCTTCACTGTTACAGTAAGTCTCCCTTCTTCATCGCCAACAT
TTTCAATTTTTTTCAGTATCTCGTGTCCTTGCACAAGCTCCCCAAAAACT
ACATACTTCCTGTCAAGACTATGATTAGCCTTAAAGGTGATGATGAACTG
AGAACCTAGTGTGTCACGATCAGCAATAGACATGGATAAAAGGCCAGGTC
TATCATGTTTTAGCCTCGGTGACTCATCAGGAAATTTCCCCTCATAAATG
CTTTCTTCACTAGTCCCATCTCTTTTTACGAAGTCACCGCCCTTAAAACT
ACATCACAAGAAAAGCAGTCGTGACCATCAGCCCTGTGTCC
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