CB304728

Overview
NameCB304728
Unique NameCB304728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9435 contig Csv1_Contig9435:220..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.567e-19
Identity = 47/102 (46.08%), Postives = 69/102 (67.65%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT  ESIY  KF DE+ +LKH  PG+LSM+ +  +T GSQF I  +    LD K+VVFG++V G+ ++K +E+VG + G  +  V I +CGE+
Sbjct:   70 QGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGEL 171          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.567e-19
Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = -3
Query:   36 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 344
            +GGDF   +GT  ESIY  KF DE+   KH  PG+LSM+ A  +T GSQF I       LD K+VVFG++V+G +++K IE VG   G+ T  V + +CG++S
Sbjct:   70 QGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQLS 172          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIH_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizosaccharomyces pombe GN=cyp3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 50/104 (48.08%), Postives = 69/104 (66.35%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGK-FPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVG-DEEGRLTVTVKIINCGEV 344
            +GGDFV  DGT   +I+  + FPDE+  LKHDRPGLLSM+ A +D+ G QF IT      LD K+VVFGE+++G++I+K+IE+       R    V I+ CGE+
Sbjct:   70 QGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANSRPKSNVAIVECGEM 173          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_SCHPO (Peptidyl-prolyl cis-trans isomerase B OS=Schizosaccharomyces pombe GN=cyp4 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.379e-19
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = -3
Query:   30 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEVSED 344
            +GGD  K DGT  +SIY  +FPDE+ +L H RPGLLSM+ A  D+ GSQF IT      LD  +VVFGE++ G++I+KKI     D   +    VKII  G++S++
Sbjct:   86 QGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKISKAETDNRDKPLEDVKIIKSGQLSQE 191          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.379e-19
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF   +GT  +SIY  KFPDE+  LKH   G+LSM+ A  +T GSQF I       LD K+VVFGE+V+G +++KKIE+ G + G+ +  + + N G +
Sbjct:  126 QGGDFTNHNGTGGKSIYGNKFPDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIESYGSQSGKTSKKIIVANSGSL 227          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.379e-19
Identity = 48/103 (46.60%), Postives = 67/103 (65.05%), Query Frame = -3
Query:   36 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 344
            +GGDF   +GT  ESIY  KF DE+   KH  PG+LSM+ A   T GSQF I  +    LD K+VVFG++V+G ++++ IE VG + G+    VKI +CG++S
Sbjct:   48 QGGDFTAGNGTGGESIYGAKFKDENFIKKHTGPGVLSMANAGPGTNGSQFFICTEKTAWLDGKHVVFGQVVEGMDVVRAIEKVGSQSGQTKKPVKIADCGQLS 150          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.720e-19
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDFVK DGT  +SIY  KF DE+ +L+H+  G+LSM+ +  +T GSQF I       LD K+VVFG +V G  ++KK+E+VG + G++   V I  CGE+
Sbjct:   77 QGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVTISRCGEL 178          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIE_RHIOR (Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus oryzae GN=cyp10 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.720e-19
Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF K +GT  +SIY GKF DE+  LKH  PG LSM+ A  +T GSQF I  +    LD K+VVFG++V G  +++++E  G   G+ +  V I++CGE+
Sbjct:  214 QGGDFTKGNGTGGKSIYGGKFEDENFVLKHTGPGTLSMANAGSNTNGSQFFICTEKTTWLDGKHVVFGQVVSGMNVVREMERCGSASGKPSKRVVIVDCGEL 315          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPID_GIBZE (Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae GN=CPR6 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.720e-19
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = -3
Query:   30 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEG-RLTVTVKIINCGEVSED 344
            +GGDF   DGT  ESIY  KF DE+  +KH++P LLSM+ A  +T GSQF IT      LD K+VVFGE++ G  ++++IEN+  + G R      I++CGE++ D
Sbjct:   77 QGGDFTAGDGTGGESIYGNKFDDEAFPIKHEKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGEVLNGKSVVRQIENLTTQSGDRPAKEALIVDCGELTGD 182          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.720e-19
Identity = 48/103 (46.60%), Postives = 65/103 (63.11%), Query Frame = -3
Query:   36 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 344
            +GGDF   +GT  ESIY  KF DE+   KH  PG+LSM+ A  +T GSQF I       LD K+VVFG++V+G +++K IE VG   GR    V + +CG++S
Sbjct:   70 QGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQLS 172          
The following BLAST results are available for this feature:
BLAST of CB304728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
CP19C_ARATH2.567e-1946.08Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
CP18C_ARATH2.567e-1946.60Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
PPIH_SCHPO3.353e-1948.08Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizo... [more]
PPIB_SCHPO4.379e-1947.17Peptidyl-prolyl cis-trans isomerase B OS=Schizosac... [more]
PPIA_DROME4.379e-1945.10Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
CYPH_ALLCE4.379e-1946.60Peptidyl-prolyl cis-trans isomerase OS=Allium cepa... [more]
PPIE_SCHJA5.720e-1947.06Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
PPIE_RHIOR5.720e-1946.08Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus ... [more]
PPID_GIBZE5.720e-1946.23Peptidyl-prolyl cis-trans isomerase D OS=Gibberell... [more]
CYPH_CATRO5.720e-1946.60Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304728 ID=CB304728; Name=CB304728; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCTCGCTAACTTCACCACA
ATTGATTATCTTCACTGTTACAGTAAGTCTCCCTTCTTCATCGCCAACAT
TTTCAATTTTTTTCAGTATCTCGTGTCCTTGCACAAGCTCCCCAAAAACT
ACATACTTCCTGTCAAGACTATGATTAGCCTTAAAGGTGATGATGAACTG
AGAACCTAGTGTGTCACGATCAGCAATAGACATGGATAAAAGGCCAGGTC
TATCATGTTTTAGCCTCGGTGACTCATCAGGAAATTTCCCCTCATAAATG
CTTTCTTCACTAGTCCCATCTCTTTTTACGAAGTCACCGCCCTTAAAACT
ACATCACAAGAAAAGCAGTCGTGACCATCAGCCCTGTGTCC
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