CB304728

Overview
NameCB304728
Unique NameCB304728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9435 contig Csv1_Contig9435:220..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.470e-19
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = -3
Query:   30 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEVSED 344
            +GGDF   DGT   SIY  +FPDE+ +LKH   G LSM+ A  +T G+QF IT   N  LD K+VVFG++V+G  ++++IEN+  D   R   +VKI NCG +  D
Sbjct:   96 QGGDFTNHDGTGGFSIYGERFPDENFKLKHVGAGWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVVEGMSVVRQIENMQTDSRDRPVKSVKIANCGHIPVD 201          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.756e-19
Identity = 46/103 (44.66%), Postives = 67/103 (65.05%), Query Frame = -3
Query:   36 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 344
            + GDF   +GT  +SIY  +FPDE+  LKH  PG+LSM+ A  +T GSQF I       LD K+VVFG + +G +++KKIE+ G + GR +  + I +CG++S
Sbjct:  105 QAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 207          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.756e-19
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDFVK DGT  +SIY  KF DE+ +L+H+  G+LSM+ +  +T GSQF I       LD K+VVFG +V G  ++KK+E+VG + G++   V I  CGE+
Sbjct:  171 QGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 272          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_RAT (Peptidyl-prolyl cis-trans isomerase B OS=Rattus norvegicus GN=Ppib PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 9.756e-19
Identity = 46/103 (44.66%), Postives = 70/103 (67.96%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEV 344
            +GGDF + DGT  +SIY  +FPDE+ +LKH  PG +SM+ A +DT GSQF IT      LD K+VVFG++++G ++++K+EN   D   +    V I++CG++
Sbjct:  103 QGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVIIVDCGKI 205          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.756e-19
Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = -3
Query:   30 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEVSED 344
            +GGDF   DGT  +SIY  +F DE+ +L+H  PGLLSM+ A RDT GSQF IT      LD K+VVFG +++G +++ KIEN       + +V V I +CG + ++
Sbjct:   93 QGGDFTNHDGTGGKSIYGNRFADENFKLRHSTPGLLSMANAGRDTNGSQFFITTVVTPWLDGKHVVFGRVLEGMDVVTKIENTPTGSRSKPSVDVVIADCGLLPDE 198          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.756e-19
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF   +G   ESIY  KF DE+  LKH   G+LSM+ A  +T GSQF ITF     LD  + VFG+LV+G+++L+ +E  G + G  T  V+I++CGE+
Sbjct:   73 QGGDFTMGNGRGGESIYGHKFNDENFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNHTVFGQLVEGNQVLEILEQHGTQSGMPTAKVEIVDCGEI 174          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: RBP2_HUMAN (E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.664e-18
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGD  K DGT  +SIY  KF DE+  +KH  PGLLSM+   ++T  SQF+IT K    LD K+VVFG +  G + +KKIE+ G  +G +   + I  CG++
Sbjct: 3123 QGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 3224          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.664e-18
Identity = 47/102 (46.08%), Postives = 63/102 (61.76%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGD  K DGT   SIY  KF DE+  +KH  PGLLSM+   +DT  SQF IT K    LD K+VVFG +  G + +KKIE+ G  +G ++  + I  CG++
Sbjct:  984 QGGDITKHDGTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRIIITECGQI 1085          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.664e-18
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = -3
Query:   42 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGE 344
            +GGDF   +GT  +SIY  KF DE+  LKH  PGLLSM+ +  +T GSQF +T      LD K+VVFGE+ +G ++L++IE  G ++G+    V I +CGE
Sbjct:  199 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVMIADCGE 299          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPID_SCHPO (40 kDa peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=wis2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.664e-18
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = -3
Query:   30 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVSED 344
            +GGDF + +GT  ESIY  KF DE+  LKHD+P LLSM+ A  +T GSQF IT      LD K+VVFG+++QG   ++ IEN+  +     V V I  CG  ++D
Sbjct:   66 QGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGKSTVRTIENLETKNDDPVVPVVIEECGTCTKD 170          
The following BLAST results are available for this feature:
BLAST of CB304728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
PPIB_SCHJA7.470e-1947.17Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIF_HUMAN9.756e-1944.66Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIE_SCHMA9.756e-1947.06Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]
PPIB_RAT9.756e-1944.66Peptidyl-prolyl cis-trans isomerase B OS=Rattus no... [more]
PPIB1_RHIOR9.756e-1945.28Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]
CYP5_RHIOR9.756e-1946.08Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
RBP2_HUMAN1.664e-1845.10E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=R... [more]
RBP2_BOVIN1.664e-1846.08E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
PPIE_MOUSE1.664e-1846.53Peptidyl-prolyl cis-trans isomerase E OS=Mus muscu... [more]
PPID_SCHPO1.664e-1846.6740 kDa peptidyl-prolyl cis-trans isomerase OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304728 ID=CB304728; Name=CB304728; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCTCGCTAACTTCACCACA
ATTGATTATCTTCACTGTTACAGTAAGTCTCCCTTCTTCATCGCCAACAT
TTTCAATTTTTTTCAGTATCTCGTGTCCTTGCACAAGCTCCCCAAAAACT
ACATACTTCCTGTCAAGACTATGATTAGCCTTAAAGGTGATGATGAACTG
AGAACCTAGTGTGTCACGATCAGCAATAGACATGGATAAAAGGCCAGGTC
TATCATGTTTTAGCCTCGGTGACTCATCAGGAAATTTCCCCTCATAAATG
CTTTCTTCACTAGTCCCATCTCTTTTTACGAAGTCACCGCCCTTAAAACT
ACATCACAAGAAAAGCAGTCGTGACCATCAGCCCTGTGTCC
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