CB304728

Overview
NameCB304728
Unique NameCB304728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9435 contig Csv1_Contig9435:220..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 88.1965 bits (217), Expect = 1.409e-17
Identity = 45/103 (43.69%), Postives = 69/103 (66.99%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEV 344
            +GGDF + DGT  +SIY  +FPDE+ +LKH  PG +SM+ A +DT GSQF IT      LD K+VVFG++++G ++++K+E+   D   +    V I +CG++
Sbjct:  103 QGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVESTKTDGRDKPLKDVTIADCGKI 205          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_STRCH (Peptidyl-prolyl cis-trans isomerase A OS=Streptomyces chrysomallus GN=ppiA PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.409e-17
Identity = 49/102 (48.04%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   45 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHE--ILKKIENVGDEEGRLTVTVKIINCG 344
            +GGDF + DGT  +SIY  KF DE+ +LKHDR GLLSM+ A ++T GSQF IT      LD K+VVFGE+       +++KIE +G   GR +  V I   G
Sbjct:   62 QGGDFTRGDGTGGKSIYGEKFADENFQLKHDRVGLLSMANAGKNTNGSQFFITTVLTPWLDGKHVVFGEVADDDSMALVRKIEALGSSSGRTSAKVTIAESG 163          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIH_USTMA (Peptidyl-prolyl cis-trans isomerase H (Fragment) OS=Ustilago maydis GN=CYP3 PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.840e-17
Identity = 49/103 (47.57%), Postives = 64/103 (62.14%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEV 344
            +GGDF+  DGT   SIY  KF DE+  LKHD+ GLLSM+ +   T G QF IT +    LD K+VVFG++V G   L+K+ENV      R  + V+I  CGE+
Sbjct:   54 QGGDFINADGTGSRSIYGDKFDDENFTLKHDKAGLLSMANSGPGTNGCQFFITAQPCPFLDGKHVVFGKVVDGLLTLRKMENVPTGANNRPKMAVRITQCGEM 156          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYPH_ENCCU (Peptidyl-prolyl cis-trans isomerase OS=Encephalitozoon cuniculi GN=CPR1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.840e-17
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = -3
Query:   45 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLT--VTVKIINCG 344
            +GGD+   +GT   SIY  KFPDE+  LKH + G+LSM+     T GSQF IT      LD K+VVFGE+V+G +++ KI   G E G++     ++I +CG
Sbjct:   66 QGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 167          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.840e-17
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF   +G   ESIY  KF DE+ +LKH  PG LSM+ A +DT GSQF IT      LD ++VVFG++V G +++ K+E  G++ G     V I++ GE+
Sbjct:  101 QGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGEL 202          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIH_EMENI (Peptidyl-prolyl cis-trans isomerase H OS=Emericella nidulans GN=cyp3 PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.403e-17
Identity = 48/103 (46.60%), Postives = 65/103 (63.11%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIY-EGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDFV  DGT   +IY   KF DE+  L+HDRPGLLSM+ +  +T G QF IT  A   L+ K+VVFG+++ G +I++ IEN      +    V II CGE+
Sbjct:   81 QGGDFVNGDGTGSCTIYGTPKFSDENFTLRHDRPGLLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVIDGMDIVRMIENTRTTRDKPNQDVVIIQCGEM 183          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPID_AMAMU (Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.403e-17
Identity = 49/106 (46.23%), Postives = 65/106 (61.32%), Query Frame = -3
Query:   30 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRL-TVTVKIINCGEVSED 344
            +GGDF   +GT  ESIY  KF DE   + H RP LLSM+ A  +T GSQF IT  A   LD K+VVFGE+++G  +++ IEN     G +    V I +CG++S D
Sbjct:   71 QGGDFTAGNGTGGESIYGEKFEDEGFPVHHSRPFLLSMANAGPNTNGSQFFITVSATPHLDGKHVVFGEVIKGRSVVRTIENNPATNGDVPKEPVVIADCGQLSSD 176          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_SCHMA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma mansoni GN=CYP PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.139e-17
Identity = 47/103 (45.63%), Postives = 65/103 (63.11%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIEN-VGDEEGRLTVTVKIINCGEV 344
            +GGDF   DGT   SIY  +FPDE+ +L+H   G LSM+ A  DT GSQF IT      LD K+VVFG++V+G  I+++IE+   D   R   ++KI +CG +
Sbjct:   96 QGGDFTNHDGTGGFSIYGDRFPDENFKLRHVGAGWLSMANAGPDTNGSQFFITTVKTSWLDGKHVVFGKVVEGMNIVRQIESETTDSRDRPVKSIKIASCGHI 198          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.139e-17
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEG-RLTVTVKIINCGEV 344
            +GGDF + DGT  +SIY  +F DE+ +L+H  PG+LSM+ A RDT GSQF IT      LD ++VVFG++++G +++  IE      G R    V I +CGE+
Sbjct:   89 QGGDFTRGDGTGGKSIYGERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGEL 191          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.139e-17
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF   +G   ESIY  KF DE+ +LKH  PG+LSM+ +  DT GSQF IT      LD ++VVFG++VQG +++ KIE  G + G     V I + GE+
Sbjct:   98 QGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGEL 199          
The following BLAST results are available for this feature:
BLAST of CB304728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
PPIB_BOVIN1.409e-1743.69Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]
PPIA_STRCH1.409e-1748.04Peptidyl-prolyl cis-trans isomerase A OS=Streptomy... [more]
PPIH_USTMA1.840e-1747.57Peptidyl-prolyl cis-trans isomerase H (Fragment) O... [more]
CYPH_ENCCU1.840e-1744.12Peptidyl-prolyl cis-trans isomerase OS=Encephalito... [more]
CP20A_ARATH1.840e-1745.10Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
PPIH_EMENI2.403e-1746.60Peptidyl-prolyl cis-trans isomerase H OS=Emericell... [more]
PPID_AMAMU2.403e-1746.23Peptidyl-prolyl cis-trans isomerase D OS=Amanita m... [more]
PPIB_SCHMA3.139e-1745.63Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIB_ORPSP3.139e-1744.66Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
CP19D_ARATH3.139e-1746.08Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304728 ID=CB304728; Name=CB304728; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCTCGCTAACTTCACCACA
ATTGATTATCTTCACTGTTACAGTAAGTCTCCCTTCTTCATCGCCAACAT
TTTCAATTTTTTTCAGTATCTCGTGTCCTTGCACAAGCTCCCCAAAAACT
ACATACTTCCTGTCAAGACTATGATTAGCCTTAAAGGTGATGATGAACTG
AGAACCTAGTGTGTCACGATCAGCAATAGACATGGATAAAAGGCCAGGTC
TATCATGTTTTAGCCTCGGTGACTCATCAGGAAATTTCCCCTCATAAATG
CTTTCTTCACTAGTCCCATCTCTTTTTACGAAGTCACCGCCCTTAAAACT
ACATCACAAGAAAAGCAGTCGTGACCATCAGCCCTGTGTCC
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