CB304728

Overview
NameCB304728
Unique NameCB304728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9435 contig Csv1_Contig9435:220..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIG_RAT (Peptidyl-prolyl cis-trans isomerase G OS=Rattus norvegicus GN=Ppig PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.099e-17
Identity = 46/103 (44.66%), Postives = 67/103 (65.05%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIEN-VGDEEGRLTVTVKIINCGEV 344
            +GGDF + +G   ESIY G F DES  +KH++  LLSM+   +DT GSQF IT K    LD  +VVFG+++ G E++++IEN   D   +    V+I++CGE+
Sbjct:   75 QGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 177          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIG_MOUSE (Peptidyl-prolyl cis-trans isomerase G OS=Mus musculus GN=Ppig PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.099e-17
Identity = 46/103 (44.66%), Postives = 67/103 (65.05%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIEN-VGDEEGRLTVTVKIINCGEV 344
            +GGDF + +G   ESIY G F DES  +KH++  LLSM+   +DT GSQF IT K    LD  +VVFG+++ G E++++IEN   D   +    V+I++CGE+
Sbjct:   75 QGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 177          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIG_HUMAN (Peptidyl-prolyl cis-trans isomerase G OS=Homo sapiens GN=PPIG PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.099e-17
Identity = 46/103 (44.66%), Postives = 67/103 (65.05%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIEN-VGDEEGRLTVTVKIINCGEV 344
            +GGDF + +G   ESIY G F DES  +KH++  LLSM+   +DT GSQF IT K    LD  +VVFG+++ G E++++IEN   D   +    V+I++CGE+
Sbjct:   75 QGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 177          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPID_YEAST (Peptidyl-prolyl cis-trans isomerase CPR6 OS=Saccharomyces cerevisiae GN=CPR6 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.099e-17
Identity = 51/110 (46.36%), Postives = 67/110 (60.91%), Query Frame = -3
Query:   30 CSFKGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIEN--VGDEEGRLTVTVKIINCGEVSED 353
            C F  GDF   +GT  ESIY+ KF DE+  +KHD+P LLSM+ A  +T GSQ  IT      LD K+VVFGE++QG  I++ IEN     E  +    VKI +CG + +D
Sbjct:   71 CQF--GDFTNFNGTGGESIYDEKFEDENFTVKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIQGKRIVRLIENQQCDQENNKPLRDVKIDDCGVLPDD 178          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_PIG (Peptidyl-prolyl cis-trans isomerase A OS=Sus scrofa GN=PPIA PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.099e-17
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT  +SIY  KF DE+  LKH  PG+LSM+ A  +T GSQF I       LD K+VVFG++ +G  I++ +E  G   G+ +  + I +CG++
Sbjct:   63 QGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_CANAL (Peptidyl-prolyl cis-trans isomerase OS=Candida albicans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.099e-17
Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF   +GT  +SIY  KF DE+   +HDRPGLLSM+ A  +T GSQF IT      LD K+VVFGE+  G +I+KKIE+ G   G  +  + I   G++
Sbjct:   61 QGGDFTNFNGTGGKSIYGTKFADENFVKRHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTDGLDIVKKIESFGSGSGATSKKIVIEESGQL 162          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_BOVIN (Peptidyl-prolyl cis-trans isomerase A OS=Bos taurus GN=PPIA PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.099e-17
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT  +SIY  KF DE+  LKH  PG+LSM+ A  +T GSQF I       LD K+VVFG++ +G  I++ +E  G   G+ +  + I +CG++
Sbjct:   63 QGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYP11_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizopus oryzae GN=cyp11 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.099e-17
Identity = 48/103 (46.60%), Postives = 62/103 (60.19%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVG-DEEGRLTVTVKIINCGEV 344
            +GGDF  R G   ESIY   FPDES   KHD  GLLSM+    +T  SQF IT +    LD K+VVFG +V G+ +++ +EN   D++ R    V I NCGE+
Sbjct:   71 QGGDFTHRTGKGGESIYGANFPDESFSRKHDTHGLLSMANRGPNTQTSQFFITTRPTPHLDGKHVVFGRVVSGYNVVEMMENEPVDDQDRPLHNVMIANCGEL 173          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.354e-17
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGD  K +GT  +SIY  KF DE+  LKH  PGLLSM+   ++T  SQF IT K    LD K+VVFG +  G + ++KIE+ G  +G ++  + I  CG++
Sbjct: 2952 QGGDITKYNGTGGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHVVFGFVKDGMDTVRKIESFGSPKGSVSRRICITECGQL 3053          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.354e-17
Identity = 44/103 (42.72%), Postives = 69/103 (66.99%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEV 344
            +GGDF + DGT  +SIY  +FPDE+ +LKH  PG +SM+ A +DT GSQF IT      LD K+VVFG++++G ++++K+E+   D   +    V I++ G++
Sbjct:  103 QGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVDSGKI 205          
The following BLAST results are available for this feature:
BLAST of CB304728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
PPIG_RAT4.099e-1744.66Peptidyl-prolyl cis-trans isomerase G OS=Rattus no... [more]
PPIG_MOUSE4.099e-1744.66Peptidyl-prolyl cis-trans isomerase G OS=Mus muscu... [more]
PPIG_HUMAN4.099e-1744.66Peptidyl-prolyl cis-trans isomerase G OS=Homo sapi... [more]
PPID_YEAST4.099e-1746.36Peptidyl-prolyl cis-trans isomerase CPR6 OS=Saccha... [more]
PPIA_PIG4.099e-1742.16Peptidyl-prolyl cis-trans isomerase A OS=Sus scrof... [more]
PPIA_CANAL4.099e-1747.06Peptidyl-prolyl cis-trans isomerase OS=Candida alb... [more]
PPIA_BOVIN4.099e-1742.16Peptidyl-prolyl cis-trans isomerase A OS=Bos tauru... [more]
CYP11_RHIOR4.099e-1746.60Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizo... [more]
RBP2_MOUSE5.354e-1744.12E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
PPIB_MOUSE5.354e-1742.72Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304728 ID=CB304728; Name=CB304728; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCTCGCTAACTTCACCACA
ATTGATTATCTTCACTGTTACAGTAAGTCTCCCTTCTTCATCGCCAACAT
TTTCAATTTTTTTCAGTATCTCGTGTCCTTGCACAAGCTCCCCAAAAACT
ACATACTTCCTGTCAAGACTATGATTAGCCTTAAAGGTGATGATGAACTG
AGAACCTAGTGTGTCACGATCAGCAATAGACATGGATAAAAGGCCAGGTC
TATCATGTTTTAGCCTCGGTGACTCATCAGGAAATTTCCCCTCATAAATG
CTTTCTTCACTAGTCCCATCTCTTTTTACGAAGTCACCGCCCTTAAAACT
ACATCACAAGAAAAGCAGTCGTGACCATCAGCCCTGTGTCC
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