CB304728

Overview
NameCB304728
Unique NameCB304728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9435 contig Csv1_Contig9435:220..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.354e-17
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT  ESIY  KFPDE+ + KH  PG+LSM+ A  +T GSQF +       LD K+VVFG +V+G +I+ K+E  G   G       I +CG++
Sbjct:   70 QGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQL 171          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIH_HUMAN (Peptidyl-prolyl cis-trans isomerase H OS=Homo sapiens GN=PPIH PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEV 344
            +GGDFV  DGT   SIY G F DE+ +L+H  PGLLSM+ +   T G QF IT      LD K+VVFG+++ G  +++KIENV      +  + V I  CGE+
Sbjct:   75 QGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIH_BOVIN (Peptidyl-prolyl cis-trans isomerase H OS=Bos taurus GN=PPIH PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEV 344
            +GGDFV  DGT   SIY G F DE+ +L+H  PGLLSM+ +   T G QF IT      LD K+VVFG+++ G  +++KIENV      +  + V I  CGE+
Sbjct:   75 QGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_PONPY (Peptidyl-prolyl cis-trans isomerase A OS=Pongo pygmaeus GN=PPIA PE=2 SV=4)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT  +SIY  KF DE+  LKH  PG+LSM+ A  +T GSQF I       LD K+VVFG++ +G  I++ +E  G   G+ +  + I +CG++
Sbjct:   63 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_PAPAN (Peptidyl-prolyl cis-trans isomerase A OS=Papio anubis GN=PPIA PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT  +SIY  KF DE+  LKH  PG+LSM+ A  +T GSQF I       LD K+VVFG++ +G  I++ +E  G   G+ +  + I +CG++
Sbjct:   63 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_PANTR (Peptidyl-prolyl cis-trans isomerase A OS=Pan troglodytes GN=PPIA PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT  +SIY  KF DE+  LKH  PG+LSM+ A  +T GSQF I       LD K+VVFG++ +G  I++ +E  G   G+ +  + I +CG++
Sbjct:   63 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_PANPA (Peptidyl-prolyl cis-trans isomerase A OS=Pan paniscus GN=PPIA PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT  +SIY  KF DE+  LKH  PG+LSM+ A  +T GSQF I       LD K+VVFG++ +G  I++ +E  G   G+ +  + I +CG++
Sbjct:   63 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_MACMU (Peptidyl-prolyl cis-trans isomerase A OS=Macaca mulatta GN=PPIA PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT  +SIY  KF DE+  LKH  PG+LSM+ A  +T GSQF I       LD K+VVFG++ +G  I++ +E  G   G+ +  + I +CG++
Sbjct:   63 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_HYLSY (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates syndactylus GN=PPIA PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT  +SIY  KF DE+  LKH  PG+LSM+ A  +T GSQF I       LD K+VVFG++ +G  I++ +E  G   G+ +  + I +CG++
Sbjct:   63 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_HYLLE (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates leucogenys GN=PPIA PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT  +SIY  KF DE+  LKH  PG+LSM+ A  +T GSQF I       LD K+VVFG++ +G  I++ +E  G   G+ +  + I +CG++
Sbjct:   63 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
The following BLAST results are available for this feature:
BLAST of CB304728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
CYP7_CAEEL5.354e-1744.12Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
PPIH_HUMAN6.992e-1745.63Peptidyl-prolyl cis-trans isomerase H OS=Homo sapi... [more]
PPIH_BOVIN6.992e-1745.63Peptidyl-prolyl cis-trans isomerase H OS=Bos tauru... [more]
PPIA_PONPY6.992e-1742.16Peptidyl-prolyl cis-trans isomerase A OS=Pongo pyg... [more]
PPIA_PAPAN6.992e-1742.16Peptidyl-prolyl cis-trans isomerase A OS=Papio anu... [more]
PPIA_PANTR6.992e-1742.16Peptidyl-prolyl cis-trans isomerase A OS=Pan trogl... [more]
PPIA_PANPA6.992e-1742.16Peptidyl-prolyl cis-trans isomerase A OS=Pan panis... [more]
PPIA_MACMU6.992e-1742.16Peptidyl-prolyl cis-trans isomerase A OS=Macaca mu... [more]
PPIA_HYLSY6.992e-1742.16Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]
PPIA_HYLLE6.992e-1742.16Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304728 ID=CB304728; Name=CB304728; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCTCGCTAACTTCACCACA
ATTGATTATCTTCACTGTTACAGTAAGTCTCCCTTCTTCATCGCCAACAT
TTTCAATTTTTTTCAGTATCTCGTGTCCTTGCACAAGCTCCCCAAAAACT
ACATACTTCCTGTCAAGACTATGATTAGCCTTAAAGGTGATGATGAACTG
AGAACCTAGTGTGTCACGATCAGCAATAGACATGGATAAAAGGCCAGGTC
TATCATGTTTTAGCCTCGGTGACTCATCAGGAAATTTCCCCTCATAAATG
CTTTCTTCACTAGTCCCATCTCTTTTTACGAAGTCACCGCCCTTAAAACT
ACATCACAAGAAAAGCAGTCGTGACCATCAGCCCTGTGTCC
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