CB304730

Overview
NameCB304730
Unique NameCB304730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.476e-13
Identity = 33/81 (40.74%), Postives = 54/81 (66.67%), Query Frame = -2
Query:  219 KLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAV 461
            KL+VVDF A+WC PCK+++P++ +  ++     F K+DVDE+  VA++  V +MPT +  K GK + R+VGA    ++ A+
Sbjct:   20 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAI 100          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.928e-13
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = -2
Query:  210 AKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 467
            A  L++VDF A WC PC++++PIL  L  +LP V   K+++DE    AE + V ++PT +L K+G  + R+VG K K+ L   + KH
Sbjct:   15 ASGLVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINKH 101          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.288e-13
Identity = 33/86 (38.37%), Postives = 58/86 (67.44%), Query Frame = -2
Query:  216 AAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 470
            A  K +V+D    WC PCK+++P+  EL +K   V+FLK+D + + KS+A+E  ++ +PTF + K+ K+++ + GAK D+L  A++
Sbjct:   92 AGDKTVVLDMFTKWCGPCKVIAPLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDLVAAID 177          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.294e-13
Identity = 36/97 (37.11%), Postives = 57/97 (58.76%), Query Frame = -2
Query:  216 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 506
            + S  E  +K + AK  +VVD  A+WC PCK ++P + +  +      F ++DVDEL  VA E  + AMPTF+L K+G+ +  +VGA    L+  ++
Sbjct:   10 ITSKAEFQEKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALEAGIK 106          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.567e-13
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = -2
Query:  210 AAKKLIVVDFTASWCPPCKLMSPILSELPKK--LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 470
            A  KL+VVDFTA+WC PC+ + PI   L K      V+FLKVDVD+   V+    ++ MPTF   K G+ ++   GA +  L+  +  H
Sbjct:   18 AGDKLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDH 106          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: GLRX3_HUMAN (Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.567e-13
Identity = 32/88 (36.36%), Postives = 57/88 (64.77%), Query Frame = -2
Query:  210 IAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 473
            + AK L+VV F A W P C  M+ +++EL K+LP V F+K++ + +  V+E++ + ++PTF+  K  + ++R+ GA   EL   V++H
Sbjct:   28 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRH 115          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRX2_SCHPO (Thioredoxin-2, mitochondrial OS=Schizosaccharomyces pombe GN=trx2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.249e-12
Identity = 38/101 (37.62%), Postives = 61/101 (60.40%), Query Frame = -2
Query:  210 HTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 512
            + VES+ +   + I+A K+ VVDF A WC PCK + P L +L ++     F+ V+ D+   +A++  V A+PT VL ++G+ L+RIVGA    L   + K+
Sbjct:   20 NAVESFGDYNTR-ISADKVTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAKY 119          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 33/86 (38.37%), Postives = 56/86 (65.12%), Query Frame = -2
Query:  216 AAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 470
            A +KL+V+D    WC PCK+++P    L +K   V+FLK+D + + + +A+E  +  +PTF + K+ KV++ + GAK D+L  A+E
Sbjct:   85 AGEKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIE 170          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: GLRX5_SCHPO (Monothiol glutaredoxin-5 OS=Schizosaccharomyces pombe GN=grx5 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 35/99 (35.35%), Postives = 59/99 (59.60%), Query Frame = -2
Query:  210 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 506
            VE + E LQ G   +++I+++F A W  PCK M+ +  +  K     +FLK++ ++   +AE + V A+P FVL    KVL RI GA   +L+ A++++
Sbjct:    8 VEQFQEILQNG--KEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAVFLKIEAEKFSDIAESFDVNAVPLFVLIHGAKVLARISGANPQKLKAAIDEY 104          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.784e-12
Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = -2
Query:  216 AAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 470
            A  K++V+D    WC PCK+++P   EL +K   ++FLK+D + + K +A+E  +  +PTF + K+ KV++ + GAK ++L  A+E
Sbjct:   95 AGDKIVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAIE 180          
The following BLAST results are available for this feature:
BLAST of CB304730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
TRX2_YEAST1.476e-1340.74Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
THIO_CHLPN1.928e-1341.38Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
TRXF_PEA3.288e-1338.37Thioredoxin F-type, chloroplastic OS=Pisum sativum... [more]
THIO_EMENI4.294e-1337.11Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
THIO_ICTPU9.567e-1340.45Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
GLRX3_HUMAN9.567e-1336.36Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2[more]
TRX2_SCHPO1.249e-1237.62Thioredoxin-2, mitochondrial OS=Schizosaccharomyce... [more]
TRXF1_ARATH1.632e-1238.37Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]
GLRX5_SCHPO2.131e-1235.35Monothiol glutaredoxin-5 OS=Schizosaccharomyces po... [more]
TRXF2_ARATH2.784e-1237.21Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304730 ID=CB304730; Name=CB304730; organism=Citrus sinensis; type=EST; length=630bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGACGCCAAAGACGGTGTGCT
AGAAGATTGTCATTTATTCGTATATACAGGCCTGTTAAACATGGTACCAT
ATTCTTACATTAAGCAACCACAAACACACACCTTACAATAAAAGACCAAT
GAGATTCATGTACGCATCAATCAAGCATTAGCAGTAGTTGCATTCTCAAC
AGTTGTTGCGTGCTTTTCGACAGCCAGCTGCAGCTCATCTTTCTTCGCTC
CCACAATCCTCTCCAGGACTTTGCCTTCTTTCGTCAGTACAAAGGTCGGC
ATGGCTTCCACAGCCCATTCCTCAGCGACGGACTTCAATTCATCAACATC
CACCTTCAAGAATATGACAGCGGGCAGCTTCTTCGGCAATTCACTCAAAA
TTGGAGACATCAACTTGCATGGCGGGCACCATGAAGCCGTAAAATCCACC
ACTATCAGTTTCTTTGCCGCAATGCCCTTTTGGAGCTGCTCGTTCCAGGA
TTCAACAGTGTGGCAGCTGATCACTTGTCCCTCCTCGGCCATCTTAATTA
TGATCACAAGTTAAATTACTTCTCTGTTCTGATTTCTTTATATTTGTTTC
TGTGTTTGGTGACGGAACTCTTGCAATCTT
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