CB304730

Overview
NameCB304730
Unique NameCB304730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.784e-12
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = -2
Query:  216 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 506
            ++S  E  +K   A   +VVDF A+WC PCK ++P L +L +    + F KVDVDEL  VA    V AMPTF   K G+  E + GA    +Q  V+
Sbjct:    6 IKSVAEYKEKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANPAAIQAGVK 102          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = -2
Query:  216 AAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 470
            A +K++V+D    WC PCK+++P    L +K   V+FLK+D + E + +A+E  +  +PTF + K+ +V++ + GAK D+L  A+E
Sbjct:   88 AGEKIVVLDMYTQWCGPCKVIAPKYKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIE 173          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 32/90 (35.56%), Postives = 63/90 (70.00%), Query Frame = -2
Query:  210 IAAKKLIVVDFTASWCPPCKLMSPILSELPKK-LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLAVEKH 473
            + ++KL++VDF A WC PC+++SP++ EL ++ +  V  +K++ DE  S++ E+ + ++PT +L K+GK ++ ++GA  K  L  A++K+
Sbjct:   17 VNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKY 106          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 37/102 (36.27%), Postives = 66/102 (64.71%), Query Frame = -2
Query:  210 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKL-PAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 509
            T +S++ +  +G+     ++ DF A WC PCK+++P+L EL +++   +  +K+DVDE +  A ++ V ++PT ++ K+G+V+E  VG K K+ LQ  V KH
Sbjct:    7 TDQSFSAETSEGV-----VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKH 103          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: GLRX3_XENTR (Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 32/87 (36.78%), Postives = 56/87 (64.37%), Query Frame = -2
Query:  210 AAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 470
            +AK L VV F A W P C  M+ +++EL K+ P V+F+K++ + +  V+E++ V ++PTF+  K  + ++R+ GA   EL   V++H
Sbjct:   20 SAKSLTVVHFWAPWAPQCTQMNEVMAELAKEQPQVMFVKLEAEAVPEVSEKYEVTSVPTFLFFKNSQKIDRLDGAHAPELTKRVQRH 106          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 30/88 (34.09%), Postives = 57/88 (64.77%), Query Frame = -2
Query:  228 QLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVG-AKKDELQ 488
            +L + ++  K +VVDF A+WC PCK++ PI  E+ +      F+KVDVD+   ++ E+ + ++PT +  ++GK+ ++ +G   K+EL+
Sbjct:    9 ELDQLLSTNKKVVVDFYANWCGPCKILGPIFEEVAQDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIGFIPKNELK 96          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.058e-11
Identity = 37/101 (36.63%), Postives = 54/101 (53.47%), Query Frame = -2
Query:  228 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKL--PAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQ 524
            VI   + + W   + K       + VD  A WC PCK +SP+ S+L  K   P  +F KV+VDE + +A    V+AMPTFV  + GK ++ + GA    L+
Sbjct:    3 VIEIRSYQHWISTIPKS----GYLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALK 99          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: GLRX3_MOUSE (Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.058e-11
Identity = 36/114 (31.58%), Postives = 67/114 (58.77%), Query Frame = -2
Query:  210 AEEGQ----VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 539
            AE G+    V+   + + + E L+  +  K L+VV F A W P C  M+ +++EL K+ P V F+K++ + +  V+E++ + ++PTF+  K  + ++R+ GA   EL   V++H
Sbjct:    6 AEAGEAAVAVVEVGSAQQFEELLR--LKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRH 117          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.381e-11
Identity = 32/95 (33.68%), Postives = 55/95 (57.89%), Query Frame = -2
Query:  210 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 494
            NE L+K   + +LI+VDF A+WC PC+++SP    L  +     FLKV+ D  + +   +++ AMPTF+  K  + ++ + GA +  +   + KH
Sbjct:   13 NEILEKS-DSNRLIIVDFFANWCGPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAIISTIRKH 106          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.804e-11
Identity = 30/84 (35.71%), Postives = 51/84 (60.71%), Query Frame = -2
Query:  219 AAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAV 470
            A ++L+ VDF+A+WC PC+ + P    L  K   V+FL+VD D  + V  E A+  +PTF   K+ + ++ + GA K++L+  +
Sbjct:  466 AGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVI 549          
The following BLAST results are available for this feature:
BLAST of CB304730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
THIO_PENCH2.784e-1241.24Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
TRXF_BRANA3.635e-1237.21Thioredoxin F-type, chloroplastic OS=Brassica napu... [more]
THIO_CYACA3.635e-1235.56Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO_BACSU3.635e-1236.27Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
GLRX3_XENTR3.635e-1236.78Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2... [more]
THIO_MYCGA8.099e-1234.09Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]
TXL1_SCHPO1.058e-1136.63Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]
GLRX3_MOUSE1.058e-1131.58Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1[more]
NGLY1_CAEBR1.381e-1133.68Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TXND2_HUMAN1.804e-1135.71Thioredoxin domain-containing protein 2 OS=Homo sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304730 ID=CB304730; Name=CB304730; organism=Citrus sinensis; type=EST; length=630bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGACGCCAAAGACGGTGTGCT
AGAAGATTGTCATTTATTCGTATATACAGGCCTGTTAAACATGGTACCAT
ATTCTTACATTAAGCAACCACAAACACACACCTTACAATAAAAGACCAAT
GAGATTCATGTACGCATCAATCAAGCATTAGCAGTAGTTGCATTCTCAAC
AGTTGTTGCGTGCTTTTCGACAGCCAGCTGCAGCTCATCTTTCTTCGCTC
CCACAATCCTCTCCAGGACTTTGCCTTCTTTCGTCAGTACAAAGGTCGGC
ATGGCTTCCACAGCCCATTCCTCAGCGACGGACTTCAATTCATCAACATC
CACCTTCAAGAATATGACAGCGGGCAGCTTCTTCGGCAATTCACTCAAAA
TTGGAGACATCAACTTGCATGGCGGGCACCATGAAGCCGTAAAATCCACC
ACTATCAGTTTCTTTGCCGCAATGCCCTTTTGGAGCTGCTCGTTCCAGGA
TTCAACAGTGTGGCAGCTGATCACTTGTCCCTCCTCGGCCATCTTAATTA
TGATCACAAGTTAAATTACTTCTCTGTTCTGATTTCTTTATATTTGTTTC
TGTGTTTGGTGACGGAACTCTTGCAATCTT
back to top