CB304730

Overview
NameCB304730
Unique NameCB304730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.804e-11
Identity = 36/102 (35.29%), Postives = 64/102 (62.75%), Query Frame = -2
Query:  210 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 509
            T  ++++ +Q G+      +VDF A+WC PCK+++P+L EL          LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   +EKH
Sbjct:    7 TDSNFDDNIQSGVN-----LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKH 103          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.804e-11
Identity = 27/86 (31.40%), Postives = 51/86 (59.30%), Query Frame = -2
Query:  210 AKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 467
            A +LI++DF A+WC PC+++SPI  +   +     FLKV+ D  + + + + + AMPTF+  K  + ++ + GA +  +   + +H
Sbjct:   21 ANRLIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQH 106          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 36/102 (35.29%), Postives = 64/102 (62.75%), Query Frame = -2
Query:  210 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 509
            T  +++E +Q G+      +VDF A+WC PCK+++P+L EL          LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:    7 TDSNFDENIQSGVK-----LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: GLRX3_RAT (Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 33/105 (31.43%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  210 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 524
            V+   +   + E L+  +  K L+VV F A W P C  M+ +++EL K+ P V F+K++ + +  V+E++ + ++PTF+  K  + ++R+ GA   EL   V++H
Sbjct:   15 VVEVGSARQFEELLR--LKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRH 117          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: GLRX3_BOVIN (Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 30/88 (34.09%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  210 IAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 473
            + AK L+VV F A W P C  M+ +++EL K+   V F+K++ + +  V+E++ + ++PTF+  K  + ++R+ GA   EL   V++H
Sbjct:   27 LRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHQQVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRH 114          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 36/112 (32.14%), Postives = 62/112 (55.36%), Query Frame = -2
Query:  213 IKMAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 548
            I+  EEG V      E + E L+   A +KL+ VDF+A+WC PC++M P+   L  K   VIFL+VD ++ + + ++  +  +PTF   K  + +    GA   +L+ ++ +
Sbjct:  404 IETLEEGLVRVIKDKEEFEEVLKD--AGEKLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 513          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  216 AAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 470
            A  K +V+D    WC PCK M+P   +L ++   VIFLK+D + E K++A+E  +  +PTF + KE  V+  + GAK D+L  A++
Sbjct:  100 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQ 185          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO1_DROME (Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 34/97 (35.05%), Postives = 58/97 (59.79%), Query Frame = -2
Query:  231 SCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDEL 518
            S  T+  ++++++   A  KLIV+DF A+WC PCK M   +  L +K  +  + LK+DVD+ + + E + V +MPTFV  ++ + L    GA + +L
Sbjct:    3 SVRTMNDYHKRIEA--ADDKLIVLDFYATWCGPCKEMESTVKSLARKYSSKAVVLKIDVDKFEELTERYKVRSMPTFVFLRQNRRLASFAGADEHKL 97          
The following BLAST results are available for this feature:
BLAST of CB304730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
THIO_STAS11.804e-1135.29Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
NGLY1_CAEEL1.804e-1131.40Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
THIO_STAHJ2.356e-1135.29Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
GLRX3_RAT2.356e-1131.43Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 ... [more]
GLRX3_BOVIN4.019e-1134.09Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1[more]
TXND2_MOUSE5.250e-1132.14Thioredoxin domain-containing protein 2 OS=Mus mus... [more]
TRXF_SPIOL5.250e-1139.53Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]
THIO1_DROME5.250e-1135.05Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304730 ID=CB304730; Name=CB304730; organism=Citrus sinensis; type=EST; length=630bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGACGCCAAAGACGGTGTGCT
AGAAGATTGTCATTTATTCGTATATACAGGCCTGTTAAACATGGTACCAT
ATTCTTACATTAAGCAACCACAAACACACACCTTACAATAAAAGACCAAT
GAGATTCATGTACGCATCAATCAAGCATTAGCAGTAGTTGCATTCTCAAC
AGTTGTTGCGTGCTTTTCGACAGCCAGCTGCAGCTCATCTTTCTTCGCTC
CCACAATCCTCTCCAGGACTTTGCCTTCTTTCGTCAGTACAAAGGTCGGC
ATGGCTTCCACAGCCCATTCCTCAGCGACGGACTTCAATTCATCAACATC
CACCTTCAAGAATATGACAGCGGGCAGCTTCTTCGGCAATTCACTCAAAA
TTGGAGACATCAACTTGCATGGCGGGCACCATGAAGCCGTAAAATCCACC
ACTATCAGTTTCTTTGCCGCAATGCCCTTTTGGAGCTGCTCGTTCCAGGA
TTCAACAGTGTGGCAGCTGATCACTTGTCCCTCCTCGGCCATCTTAATTA
TGATCACAAGTTAAATTACTTCTCTGTTCTGATTTCTTTATATTTGTTTC
TGTGTTTGGTGACGGAACTCTTGCAATCTT
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