CB304739

Overview
NameCB304739
Unique NameCB304739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B2_SOLLC (Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 1.719e-42
Identity = 91/111 (81.98%), Postives = 98/111 (88.29%), Query Frame = -1
Query:  179 ISKDGG--GVEXXXXXXXKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 505
            + K+ G  G +       K++ETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   30 LPKESGSSGADKKKKKSKKSIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140          
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B2_MAIZE (Histone H2B.2 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 1.719e-42
Identity = 90/107 (84.11%), Postives = 96/107 (89.72%), Query Frame = -1
Query:  179 KDGGGVEXXXXXXXKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            K+GG  +       K+VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   44 KEGGEGKRGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B5_WHEAT (Histone H2B.5 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 2.932e-42
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = -1
Query:  179 GGVEXXXXXXXKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 490
            GG +       K+VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   33 GGADKKKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 136          
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSJ (Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.829e-42
Identity = 90/105 (85.71%), Postives = 94/105 (89.52%), Query Frame = -1
Query:  179 GGGVEXXXXXXXKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            G G +       K+VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B1_SOLLC (Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=2 SV=4)

HSP 1 Score: 171.014 bits (432), Expect = 3.829e-42
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = -1
Query:  179 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 454
            +VETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   51 SVETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSN 142          
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B4_MAIZE (Histone H2B.4 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 5.001e-42
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = -1
Query:  179 GGVEXXXXXXXKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 490
            GG +       K+VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   34 GGEKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 137          
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B3_MAIZE (Histone H2B.3 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 5.001e-42
Identity = 88/107 (82.24%), Postives = 96/107 (89.72%), Query Frame = -1
Query:  179 KDGGGVEXXXXXXXKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            K+GG  +       K+VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPT+TSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   47 KEGGEGKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTVTSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B5_MAIZE (Histone H2B.5 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 6.531e-42
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = -1
Query:  179 GGVEXXXXXXXKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 490
            GG +       K+VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   51 GGDKKGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 154          
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B1_WHEAT (Histone H2B.1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 8.530e-42
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = -1
Query:  179 GGVEXXXXXXXKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 490
            GG +       K+VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GGDKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 152          
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSJ (Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.114e-41
Identity = 89/105 (84.76%), Postives = 94/105 (89.52%), Query Frame = -1
Query:  179 GGGVEXXXXXXXKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            G G +       K+VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
The following BLAST results are available for this feature:
BLAST of CB304739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B2_SOLLC1.719e-4281.98Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=... [more]
H2B2_MAIZE1.719e-4284.11Histone H2B.2 OS=Zea mays PE=2 SV=3[more]
H2B5_WHEAT2.932e-4285.58Histone H2B.5 OS=Triticum aestivum PE=1 SV=3[more]
H2B6_ORYSJ3.829e-4285.71Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B1_SOLLC3.829e-4294.57Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=... [more]
H2B4_MAIZE5.001e-4285.58Histone H2B.4 OS=Zea mays PE=3 SV=3[more]
H2B3_MAIZE5.001e-4282.24Histone H2B.3 OS=Zea mays PE=3 SV=3[more]
H2B5_MAIZE6.531e-4285.58Histone H2B.5 OS=Zea mays PE=2 SV=3[more]
H2B1_WHEAT8.530e-4285.58Histone H2B.1 OS=Triticum aestivum PE=1 SV=3[more]
H2B8_ORYSJ1.114e-4184.76Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_B09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304739 ID=CB304739; Name=CB304739; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGAAGACAATAAGTTTTC
ATTAATCTGTCCATAAGAAGCATTATCAGGAGCAAACCCTAGGCTAGGCG
GGGCGGCTAAAAAGTAACGAAAGGAACAATTTCAAAAGAACACGGAACAC
TAACAAGACAAAAAATTGCACAAAATCAAGAGCTCGTGAACTTGGTAACG
GCCTTGGTCCCCTCCGACACGGCGTGCTTGGCCAATTCACCGGGCAAGAC
CAATCTCACGGCGGTCTGGATCTCCCTCGACGTGATCGTCGGCTTCTTGT
TGTACCTAGCGAGACGAGACGCCTCTTGGGCTAATTTCTCGAAGATATCG
TTGATGAAACTGTTCATGATGCCCATGGCCTTGCTGGAGATACCGATATC
GGGATGAACCTGCTTCAGGACCTTGAAAATGTAGATCTTGTACGTCTCCA
CATTCTTCTTCAACTTCCTCTTCTTTTTCTCGACGCCGCCGCCATCTTTC
GAGATCTTCTTCTCGGCTTTCGGCCTCTTCTCGGCTGGGGCTTTCTCGGC
TACCGGCTTTTTCTCCGCTGGCTTCTTCTCGGCTTT
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