CB304745

Overview
NameCB304745
Unique NameCB304745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:1186..1811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.650e-31
Identity = 65/72 (90.28%), Postives = 70/72 (97.22%), Query Frame = -1
Query:  411 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 626
            KIDRRSGKELE  PKFLKNGDAGFVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSV+KK+P+GA
Sbjct:  366 KIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTGA 437          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.650e-31
Identity = 65/72 (90.28%), Postives = 70/72 (97.22%), Query Frame = -1
Query:  411 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 626
            KIDRRSGKELE  PKFLKNGDAGFVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSV+KK+P+GA
Sbjct:  366 KIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTGA 437          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.461e-31
Identity = 65/72 (90.28%), Postives = 70/72 (97.22%), Query Frame = -1
Query:  411 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 626
            KIDRRSGKELEKEPKFLKNGDAG VKM+PTKPMVVETF+EYPPLGRFAVR MRQTVAVGVIK+V+KKDP+GA
Sbjct:  366 KIDRRSGKELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVMRQTVAVGVIKAVEKKDPTGA 437          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.997e-30
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = -1
Query:  411 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 626
            KIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIK V+KKDP+GA
Sbjct:  366 KIDRRSGKELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKGVEKKDPTGA 437          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_CANAL (Elongation factor 1-alpha OS=Candida albicans GN=TEF1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.753e-26
Identity = 54/71 (76.06%), Postives = 64/71 (90.14%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            KIDRR+GK+LE+ PKF+K+GDA  VKM+PTKPM VE F++YPPLGRFAVRDMRQTVAVGVIKSV+K D +G
Sbjct:  376 KIDRRTGKKLEENPKFVKSGDAAIVKMVPTKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSDKAG 446          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.173e-25
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = -1
Query:  426 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 626
            KIDRRSGK+LE +PKFLK+GDA  V+MIP KPM VETFS+YPPLGRFAVRDMRQTVAVGVIK VDKK
Sbjct:  378 KIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.838e-25
Identity = 53/71 (74.65%), Postives = 63/71 (88.73%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            KIDRR+GK++E  PKF+K+GDA  VKM+P+KPM VE F+EYPPLGRFAVRDMRQTVAVGVIKSV+K D +G
Sbjct:  377 KIDRRTGKKMEDSPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKSVEKSDKAG 447          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            KIDRRSGK+LE  PKF+K+GDA  VK+IP KPMVVE FS YPPLGRFAVRDMRQTVAVGVIK+VD K+ SG
Sbjct:  378 KIDRRSGKKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYPPLGRFAVRDMRQTVAVGVIKAVDTKEISG 448          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A2_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis GN=eef1ao PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = -1
Query:  417 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPS 626
            KIDRRSGK+LE +PKFLK+GDA  V+MIP KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK VDKK  S
Sbjct:  378 KIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKGVDKKAAS 447          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.322e-25
Identity = 53/71 (74.65%), Postives = 63/71 (88.73%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            KIDRR+GK LE  PKF+K+GDA  VK++P+KPM VE+++EYPPLGRFAVRDMRQTVAVG+IKSVDK D SG
Sbjct:  376 KIDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGIIKSVDKTDKSG 446          
The following BLAST results are available for this feature:
BLAST of CB304745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
EF1A2_HORVU2.650e-3190.28Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_HORVU2.650e-3190.28Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A1_DAUCA3.461e-3190.28Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A_WHEAT4.997e-3088.89Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_CANAL9.753e-2676.06Elongation factor 1-alpha OS=Candida albicans GN=T... [more]
EF1A3_XENLA2.173e-2583.58Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_YARLI2.838e-2574.65Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]
EF1A_ORYLA3.706e-2578.87Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A2_XENLA4.840e-2580.00Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_SCHCO6.322e-2574.65Elongation factor 1-alpha OS=Schizophyllum commune... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_C07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_C07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304745 ID=CB304745; Name=CB304745; organism=Citrus sinensis; type=EST; length=626bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAGAAGCCAAAAATATTTG
AAAATGGCAAACTAGATAGAACATAAAACATCAACAAACAACATCTTAAG
GAGCTCAGCAGAGACCTAAAACTCCTGAGCTGCTTACAAAATATCCAAGT
TTGAACATGACATGGACAACAAAAATAGACTCAATACAGTAATCTCGCCA
CCGCCGATCAAGAACCCAGTTCTGTGAACAAAAGTCTCTTGTCGATGGTG
ACGAATTGTAATTATAACCAGCAAATTGACGACCCAAACATCCAACACAT
TTATGCCTAAAAAGAACACAATCTTTATTGTGATGACGCCTATAGACATT
ACTTGCAGACAAAGATACCAGCACAGTTCACTTCTTCTTCACAGCAGACT
TGGTTACCTTGGCTCCAGATGGATCCTTCTTGTCCACGCTCTTGATGACT
CCAACAGCGACGGTCTGGCGCATGTCTCTCACAGCAAAACGACCAAGTGG
GGGATATTCGGAGAAAGTTTCCACAACCATAGGCTTGGTGGGAATCATCT
TAACAAACCCAGCATCACCATTCTTTAAGAATTTGGGCTCCTTCTCCAGC
TCCTTACCAGATCGCCTGTCAATCTT
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