CB304745

Overview
NameCB304745
Unique NameCB304745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.492e-13
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = -1
Query:  435 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 626
            +ID ++GKE EK P+F+K GD+  VK  P K +V E F E+P LGRFA+RDM +TV VGVI  V
Sbjct:  364 RIDPKTGKEAEKNPQFIKAGDSAIVKFKPIKELVAEKFREFPALGRFAMRDMGKTVGVGVIIDV 427          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_PYRKO (Elongation factor 1-alpha OS=Pyrococcus kodakaraensis GN=tuf PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.492e-13
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  423 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 626
            K+D R+G  +E+ P+F+K GD+  V + PTK MV+E   E P +GRFA+RDM QTVA G++ S+ K D
Sbjct:  361 KLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAD 428          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.492e-13
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = -1
Query:  435 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 626
            K+D R+G+ +E++P+F+K GD   VK+ P KP+V E FSE+P LGRFA+RDM +T+A G I  V
Sbjct:  373 KLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSEFPALGRFALRDMGRTIAAGQIIEV 436          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_METMJ (Elongation factor 1-alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.492e-13
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = -1
Query:  426 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 626
            K+D R+G+  E+ P FLK GDA  VK+ PT+PMV+E   E P LGRFAVRDM  T+A GV   +  K
Sbjct:  356 KLDPRTGQVKEENPTFLKTGDAAIVKIRPTQPMVIEKVKEIPQLGRFAVRDMGSTIAAGVCMDITPK 422          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_ARCFU (Elongation factor 1-alpha OS=Archaeoglobus fulgidus GN=tuf PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.492e-13
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = -1
Query:  444 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVI 626
            KID R+G+  E+ P+FLK GDA  VK+ PT+PMV+E   + PP+GRFA+RDM  T+  G++
Sbjct:  356 KIDPRTGQVKEENPQFLKTGDAAIVKLEPTRPMVIERVKDIPPMGRFAIRDMGMTIGAGMV 416          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_METBF (Elongation factor 1-alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.254e-13
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = -1
Query:  426 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 626
            K+D +SG+  E+ P FLK GDA  V + PTKPMV+E   E P LGRFA+RDM  T+A G+  SV +K
Sbjct:  356 KLDPKSGQVKEENPTFLKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  423 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 626
            K++  +G+ LE+ P FLK GDA  VK++PTKP+V+E+  E P LGRFA+RDM  TVA G+   V  K+
Sbjct:  360 KLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_METKA (Elongation factor 1-alpha OS=Methanopyrus kandleri GN=tuf PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = -1
Query:  423 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 626
            KID  +G+ +E+ P FLK G+A  V++ PTKPMV+E  S  P LGRFA+RDM QTVA G+   ++K++
Sbjct:  356 KIDPATGEVIEENPDFLKTGEAAKVRIRPTKPMVIEEVSFIPQLGRFAIRDMGQTVAAGMCVKIEKEE 423          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_THEGJ (Elongation factor 1-alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=tuf PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  423 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 626
            K+D R+G  +E+ P+F+K GD+  V + PTK MV+E   E P +GRFA+RDM QTVA G++ S+ K +
Sbjct:  361 KLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_THEAC (Elongation factor 1-alpha OS=Thermoplasma acidophilum GN=tuf PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = -1
Query:  426 IDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 623
            ++ + G  L+++P F+KNGD   VK+IP KP+V+E  SE P LGRFAVRDM QTVA G    ++K+
Sbjct:  359 LNPKDGTTLKEKPDFIKNGDVAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          
The following BLAST results are available for this feature:
BLAST of CB304745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
EF1A_SULAC2.492e-1356.25Elongation factor 1-alpha OS=Sulfolobus acidocalda... [more]
EF1A_PYRKO2.492e-1350.00Elongation factor 1-alpha OS=Pyrococcus kodakaraen... [more]
EF1A_PYRIL2.492e-1353.13Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_METMJ2.492e-1353.73Elongation factor 1-alpha OS=Methanoculleus marisn... [more]
EF1A_ARCFU2.492e-1352.46Elongation factor 1-alpha OS=Archaeoglobus fulgidu... [more]
EF1A_METBF3.254e-1353.73Elongation factor 1-alpha OS=Methanosarcina barker... [more]
EF1A_METM74.250e-1351.47Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METKA4.250e-1351.47Elongation factor 1-alpha OS=Methanopyrus kandleri... [more]
EF1A_THEGJ7.250e-1348.53Elongation factor 1-alpha OS=Thermococcus gammatol... [more]
EF1A_THEAC7.250e-1351.52Elongation factor 1-alpha OS=Thermoplasma acidophi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_C07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_C07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304745 ID=CB304745; Name=CB304745; organism=Citrus sinensis; type=EST; length=626bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAGAAGCCAAAAATATTTG
AAAATGGCAAACTAGATAGAACATAAAACATCAACAAACAACATCTTAAG
GAGCTCAGCAGAGACCTAAAACTCCTGAGCTGCTTACAAAATATCCAAGT
TTGAACATGACATGGACAACAAAAATAGACTCAATACAGTAATCTCGCCA
CCGCCGATCAAGAACCCAGTTCTGTGAACAAAAGTCTCTTGTCGATGGTG
ACGAATTGTAATTATAACCAGCAAATTGACGACCCAAACATCCAACACAT
TTATGCCTAAAAAGAACACAATCTTTATTGTGATGACGCCTATAGACATT
ACTTGCAGACAAAGATACCAGCACAGTTCACTTCTTCTTCACAGCAGACT
TGGTTACCTTGGCTCCAGATGGATCCTTCTTGTCCACGCTCTTGATGACT
CCAACAGCGACGGTCTGGCGCATGTCTCTCACAGCAAAACGACCAAGTGG
GGGATATTCGGAGAAAGTTTCCACAACCATAGGCTTGGTGGGAATCATCT
TAACAAACCCAGCATCACCATTCTTTAAGAATTTGGGCTCCTTCTCCAGC
TCCTTACCAGATCGCCTGTCAATCTT
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