CB304745

Overview
NameCB304745
Unique NameCB304745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_ASPOR (Elongation factor 1-alpha OS=Aspergillus oryzae GN=tef1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 50/66 (75.76%), Postives = 61/66 (92.42%), Query Frame = -1
Query:  429 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 626
            KIDRR+GK +E +PKF+K+GDA  VKMIP+KPM VE+F+++PPLGRFAVRDMRQTVAVGVIKSV+K
Sbjct:  377 KIDRRTGKSVEDKPKFIKSGDAAIVKMIPSKPMCVESFTDFPPLGRFAVRDMRQTVAVGVIKSVEK 442          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 51/71 (71.83%), Postives = 60/71 (84.51%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            K+DRRSGK+LE  PK +K+GDA  VKM+ +KPM VE F+ YPPLGRFAVRDMRQTVAVGVIKSV+KK+  G
Sbjct:  370 KMDRRSGKKLEDSPKMIKSGDAAMVKMVASKPMCVEAFTSYPPLGRFAVRDMRQTVAVGVIKSVEKKEVEG 440          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            K+DRR+GK  E  PKFLK+GDAG V++IPTKP  VE+F++Y PLGRFAVRDMRQTVAVGVIKSV K D SG
Sbjct:  379 KVDRRTGKSTEASPKFLKSGDAGIVELIPTKPPCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVTKDDGSG 449          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_ASHGO (Elongation factor 1-alpha OS=Ashbya gossypii GN=TEF PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.530e-23
Identity = 52/71 (73.24%), Postives = 59/71 (83.10%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            K DRR+GK+LE  PKFLK GDA  VK +P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIKSV K D +G
Sbjct:  376 KNDRRTGKKLEDSPKFLKAGDAAMVKFVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVVKSDKAG 446          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A1_OSCTI (Elongation factor 1-alpha 1 OS=Oscheius tipulae GN=eft-1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.530e-23
Identity = 51/71 (71.83%), Postives = 61/71 (85.92%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            K+DRR+GK++E  PKFLK+GDAG V++IPTKP+ VE F++Y PLGRFAVRDMRQTVAVGVIK V K D SG
Sbjct:  378 KVDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGSG 448          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23
Identity = 50/72 (69.44%), Postives = 60/72 (83.33%), Query Frame = -1
Query:  411 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 626
            KIDRR+GK  E  PKF+K+GD+  VKMIP+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK+V+K   + A
Sbjct:  377 KIDRRTGKATESAPKFIKSGDSAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVEKSSAAAA 448          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23
Identity = 49/71 (69.01%), Postives = 60/71 (84.51%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            K+DRRSGK  E+ PKF+K+GDA  V ++P+KP+ VE F E+PPLGRFAVRDMRQTVAVGVIK+V+ KD SG
Sbjct:  378 KVDRRSGKTTEENPKFIKSGDAAIVNLVPSKPLCVEAFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKDASG 448          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_PUCGR (Elongation factor 1-alpha OS=Puccinia graminis GN=TEF PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.009e-22
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = -1
Query:  423 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 626
            KIDRR+GK LE+ PKF+K+GDA  VKM+P+K M VE F++YPPLGRFAVRDMRQTVAVGVIKSV+K D
Sbjct:  375 KIDRRTGKALEEAPKFVKSGDACLVKMVPSKAMCVEPFADYPPLGRFAVRDMRQTVAVGVIKSVEKTD 442          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A2_SCHPO (Elongation factor 1-alpha-B/C OS=Schizosaccharomyces pombe GN=tef1b PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.009e-22
Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = -1
Query:  411 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 626
            KIDRRSGK++E+ PKF+K+GDA   KM+P+KPM VE F++Y PLGRFAVRDMRQTVAVGVIK+V+K  P  A
Sbjct:  376 KIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAPGAA 447          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A1_SCHPO (Elongation factor 1-alpha-A OS=Schizosaccharomyces pombe GN=tef1a PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.009e-22
Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = -1
Query:  411 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 626
            KIDRRSGK++E+ PKF+K+GDA   KM+P+KPM VE F++Y PLGRFAVRDMRQTVAVGVIK+V+K  P  A
Sbjct:  376 KIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAPGAA 447          
The following BLAST results are available for this feature:
BLAST of CB304745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
EF1A_ASPOR3.469e-2375.76Elongation factor 1-alpha OS=Aspergillus oryzae GN... [more]
EF1AC_PORPU3.469e-2371.83Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A3_OSCTI3.469e-2373.24Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
EF1A_ASHGO4.530e-2373.24Elongation factor 1-alpha OS=Ashbya gossypii GN=TE... [more]
EF1A1_OSCTI4.530e-2371.83Elongation factor 1-alpha 1 OS=Oscheius tipulae GN... [more]
EF1A_TRIRE7.728e-2369.44Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]
EF1A1_DROME7.728e-2369.01Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A_PUCGR1.009e-2275.00Elongation factor 1-alpha OS=Puccinia graminis GN=... [more]
EF1A2_SCHPO1.009e-2269.44Elongation factor 1-alpha-B/C OS=Schizosaccharomyc... [more]
EF1A1_SCHPO1.009e-2269.44Elongation factor 1-alpha-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_C07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_C07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304745 ID=CB304745; Name=CB304745; organism=Citrus sinensis; type=EST; length=626bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAGAAGCCAAAAATATTTG
AAAATGGCAAACTAGATAGAACATAAAACATCAACAAACAACATCTTAAG
GAGCTCAGCAGAGACCTAAAACTCCTGAGCTGCTTACAAAATATCCAAGT
TTGAACATGACATGGACAACAAAAATAGACTCAATACAGTAATCTCGCCA
CCGCCGATCAAGAACCCAGTTCTGTGAACAAAAGTCTCTTGTCGATGGTG
ACGAATTGTAATTATAACCAGCAAATTGACGACCCAAACATCCAACACAT
TTATGCCTAAAAAGAACACAATCTTTATTGTGATGACGCCTATAGACATT
ACTTGCAGACAAAGATACCAGCACAGTTCACTTCTTCTTCACAGCAGACT
TGGTTACCTTGGCTCCAGATGGATCCTTCTTGTCCACGCTCTTGATGACT
CCAACAGCGACGGTCTGGCGCATGTCTCTCACAGCAAAACGACCAAGTGG
GGGATATTCGGAGAAAGTTTCCACAACCATAGGCTTGGTGGGAATCATCT
TAACAAACCCAGCATCACCATTCTTTAAGAATTTGGGCTCCTTCTCCAGC
TCCTTACCAGATCGCCTGTCAATCTT
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