CB304745

Overview
NameCB304745
Unique NameCB304745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:1186..1811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.722e-22
Identity = 49/71 (69.01%), Postives = 60/71 (84.51%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            KIDRR+GK +E  PKF+K+GDA  VK++  KP+ VET+++YPPLGRFAVRDMRQTVAVGVIKSVDK +  G
Sbjct:  376 KIDRRTGKVMEAAPKFVKSGDAAIVKLVAQKPLCVETYADYPPLGRFAVRDMRQTVAVGVIKSVDKTEKGG 446          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.722e-22
Identity = 48/70 (68.57%), Postives = 60/70 (85.71%), Query Frame = -1
Query:  417 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPS 626
            K DRR+GK  E EPKF+K+GDA  + ++P+KP+ VE FS++PPLGRFAVRDMRQTVAVGVIKSV+ KDP+
Sbjct:  378 KCDRRTGKTTEAEPKFIKSGDAAMITLVPSKPLCVEAFSDFPPLGRFAVRDMRQTVAVGVIKSVNFKDPT 447          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.248e-22
Identity = 49/68 (72.06%), Postives = 57/68 (83.82%), Query Frame = -1
Query:  423 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 626
            KIDRR+GK  E+ PKF+KNGDA  V +IPTK + VE F EYPPLGR+AVRDM+QTVAVGVIK V+KKD
Sbjct:  367 KIDRRTGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKVEKKD 434          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A4_OSCTI (Elongation factor 1-alpha 4 OS=Oscheius tipulae GN=eft-4 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.248e-22
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = -1
Query:  417 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPS 626
            K+DRR+GK++E  PKFLK+GDAG V++IPTKP+ VE F++Y PLGRFAVRDMRQTVAVGVIK V K D S
Sbjct:  378 KVDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGS 447          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.544e-22
Identity = 49/66 (74.24%), Postives = 57/66 (86.36%), Query Frame = -1
Query:  429 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 626
            KIDRRSGK +E EPK +K+GDA  + +IP+K M VE+FS+YPPLGRFAVRDMRQTVAVGVIK VDK
Sbjct:  380 KIDRRSGKVIETEPKMVKSGDAAIINLIPSKGMCVESFSQYPPLGRFAVRDMRQTVAVGVIKEVDK 445          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.903e-21
Identity = 49/71 (69.01%), Postives = 61/71 (85.92%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            KIDRRS K +E  PKF+K+GD+  VKM+P+KPM VE +++YPPLGRFAVRDMRQTVAVGVIK+V+K D +G
Sbjct:  376 KIDRRSEK-MEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 445          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.446e-21
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            K DRR+GK  E+ PK +K+GDA  V + PTKPM VE F E+PPLGRFAVRDMRQTVAVGVIKSV  KD  G
Sbjct:  378 KCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTFKDTQG 448          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.234e-20
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = -1
Query:  423 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 626
            K+D+RSGK LE+ PK +K+GDA  V M P KP+ VE F++YPPLGRFAVRDM+QTVAVGVIKSV KK+
Sbjct:  362 KMDKRSGKVLEENPKLIKSGDAALVVMQPLKPLCVEAFTDYPPLGRFAVRDMKQTVAVGVIKSVTKKE 429          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_BOMMO (Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.611e-20
Identity = 45/71 (63.38%), Postives = 58/71 (81.69%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            K+DRR+GK  E  PK +K+GDA  V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K+  G
Sbjct:  378 KVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGG 448          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.104e-20
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            K+DRRSGK  E  PK +K+GDA  V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIKSV  KD +G
Sbjct:  327 KVDRRSGKSTEDNPKAIKSGDAAIVILQPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVVFKDATG 397          
The following BLAST results are available for this feature:
BLAST of CB304745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
EF1A_CRYNE1.722e-2269.01Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A_ARTSA1.722e-2268.57Elongation factor 1-alpha OS=Artemia salina PE=1 S... [more]
EF1A_TETPY2.248e-2272.06Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A4_OSCTI2.248e-2271.43Elongation factor 1-alpha 4 OS=Oscheius tipulae GN... [more]
EF1A_HYDAT8.544e-2274.24Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A3_RHIRA1.903e-2169.01Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_APIME9.446e-2169.01Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A_CRYPV1.234e-2069.12Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_BOMMO1.611e-2063.38Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1[more]
EF1A_RHYAM2.104e-2067.61Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_C07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_C07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304745 ID=CB304745; Name=CB304745; organism=Citrus sinensis; type=EST; length=626bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAGAAGCCAAAAATATTTG
AAAATGGCAAACTAGATAGAACATAAAACATCAACAAACAACATCTTAAG
GAGCTCAGCAGAGACCTAAAACTCCTGAGCTGCTTACAAAATATCCAAGT
TTGAACATGACATGGACAACAAAAATAGACTCAATACAGTAATCTCGCCA
CCGCCGATCAAGAACCCAGTTCTGTGAACAAAAGTCTCTTGTCGATGGTG
ACGAATTGTAATTATAACCAGCAAATTGACGACCCAAACATCCAACACAT
TTATGCCTAAAAAGAACACAATCTTTATTGTGATGACGCCTATAGACATT
ACTTGCAGACAAAGATACCAGCACAGTTCACTTCTTCTTCACAGCAGACT
TGGTTACCTTGGCTCCAGATGGATCCTTCTTGTCCACGCTCTTGATGACT
CCAACAGCGACGGTCTGGCGCATGTCTCTCACAGCAAAACGACCAAGTGG
GGGATATTCGGAGAAAGTTTCCACAACCATAGGCTTGGTGGGAATCATCT
TAACAAACCCAGCATCACCATTCTTTAAGAATTTGGGCTCCTTCTCCAGC
TCCTTACCAGATCGCCTGTCAATCTT
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