CB304748

Overview
NameCB304748
Unique NameCB304748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6745 contig Csv1_Contig6745:445..1022. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304748 vs. ExPASy Swiss-Prot
Match: HUB1_DEBHA (Ubiquitin-like modifier HUB1 OS=Debaryomyces hansenii GN=HUB1 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.106e-21
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = -2
Query:  308 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGPELYYS 526
            MIEV+ NDRLGKK++VKC   DTIGDLKK+++ Q GT  +KI ++K Y +YKDHITL DYE+H+G   ELYYS
Sbjct:    1 MIEVLANDRLGKKIKVKCMPTDTIGDLKKIISLQIGTSYEKIVLKKGYQVYKDHITLDDYEVHNGFNFELYYS 73          
BLAST of CB304748 vs. ExPASy Swiss-Prot
Match: HUB1_CANGA (Ubiquitin-like modifier HUB1 OS=Candida glabrata GN=HUB1 PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.041e-20
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = -2
Query:  308 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGPELYYS 526
            MIEV++NDRLGKK+RVKC EDDT+GD KK+++ Q G +  KI +QK  ++ KDHITL DYE+HD    ELYYS
Sbjct:    1 MIEVLVNDRLGKKIRVKCLEDDTVGDFKKVLSVQLGMQPSKIVLQKGGSVLKDHITLYDYEVHDNTNLELYYS 73          
BLAST of CB304748 vs. ExPASy Swiss-Prot
Match: HUB1_YEAST (Ubiquitin-like modifier HUB1 OS=Saccharomyces cerevisiae GN=HUB1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.736e-19
Identity = 43/72 (59.72%), Postives = 58/72 (80.56%), Query Frame = -2
Query:  311 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGPELYY 526
            MIEVV+NDRLGKKVRVKC  +D++GD KK+++ Q GT+ +KI +QK  ++ KDHI+L+DYE+HD    ELYY
Sbjct:    1 MIEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 72          
BLAST of CB304748 vs. ExPASy Swiss-Prot
Match: HUB1_KLULA (Ubiquitin-like modifier HUB1 OS=Kluyveromyces lactis GN=HUB1 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.736e-19
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = -2
Query:  311 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGT-RADKIRIQKWYNIYKDHITLKDYEIHDGMGPELYY 526
            MIEV++NDRLGKKV VKC  +DT+GD KK+++ Q GT  A KI +QK  ++ KDHITL+DYE+HDG   ELYY
Sbjct:    1 MIEVLVNDRLGKKVNVKCLSEDTVGDFKKVLSVQLGTASASKIVLQKGGSVLKDHITLEDYEVHDGTNLELYY 73          
BLAST of CB304748 vs. ExPASy Swiss-Prot
Match: UBL5_DICDI (Ubiquitin-like protein 5 OS=Dictyostelium discoideum GN=ubl5 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.847e-18
Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = -2
Query:  308 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKD--------------YEIHDGMGPELYYS 526
            MIEVV NDRLG KVRVK N DDTIGDLKK+++AQ G +A+KIR+QK Y+I+KD     +              YEIHDG G ELYY+
Sbjct:    1 MIEVVCNDRLGNKVRVKVNSDDTIGDLKKVLSAQIGIKAEKIRLQKSYSIFKDRNNNNNYNNYNNNNNNYYYYYEIHDGDGLELYYN 87          
BLAST of CB304748 vs. ExPASy Swiss-Prot
Match: HUB1_ASHGO (Ubiquitin-like modifier HUB1 OS=Ashbya gossypii GN=HUB1 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = -2
Query:  311 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGPELYY 526
            MIEV++NDRLGKK+RVKC   D++GDLKK++A Q GT   K+ + K     KDHI+L DYE+HDG   ELYY
Sbjct:    1 MIEVIVNDRLGKKLRVKCLSTDSVGDLKKVLAVQLGTAHGKVALHKGGVNLKDHISLDDYEVHDGTYLELYY 72          
The following BLAST results are available for this feature:
BLAST of CB304748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
HUB1_DEBHA2.106e-2163.01Ubiquitin-like modifier HUB1 OS=Debaryomyces hanse... [more]
HUB1_CANGA3.041e-2061.64Ubiquitin-like modifier HUB1 OS=Candida glabrata G... [more]
HUB1_YEAST5.736e-1959.72Ubiquitin-like modifier HUB1 OS=Saccharomyces cere... [more]
HUB1_KLULA5.736e-1961.64Ubiquitin-like modifier HUB1 OS=Kluyveromyces lact... [more]
UBL5_DICDI2.847e-1856.32Ubiquitin-like protein 5 OS=Dictyostelium discoide... [more]
HUB1_ASHGO2.410e-1758.33Ubiquitin-like modifier HUB1 OS=Ashbya gossypii GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_C10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_C10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304748 ID=CB304748; Name=CB304748; organism=Citrus sinensis; type=EST; length=578bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGACAAAATTCTATCAGCCTA
ATGGACTGACAAGCATGTGGTACCTCAATACCTTGATAAAGATCTAAACA
CCATTCAAAATGGAGAGTAAGTCCAGATCCCAGATATGTTACATAACCAC
AAATAAGTTTTTACGAGTCTTCACAAATTTTTTCTTACAAGACAGTATTA
GTAAAGTTGGCCCTGCCGCATCTTCCAATACCCCTTGCTTATTATAGCAT
ATGGTTCCTAGTAGTATTGACTGCTTGCAGCAGCATATATATTTAACGGT
GGATTTAGCTGTAATAGAGTTCAGGGCCCATGCCGTCGTGAATCTCGTAG
TCCTTGAGAGTGATGTGGTCCTTGTAGATGTTGTACCACTTCTGAATCCG
AATCTTGTCGGCTCGAGTCCCGGTCTGAGCCGCCACCAGCTTCTTCAAGT
CGCCTATGGTGTCGTCTTCGTTGCACTTCACGCGCACCTTCTTCCCGAGC
CTGTCGTTCAGCACCACCTCAATCATCTTTGTCTCCTGTTTTGATTTTCC
CTGCCGAATGATTTGGGATTTTCTCCCC
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