CB304754

Overview
NameCB304754
Unique NameCB304754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_SHELP (Argininosuccinate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=argG PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 3.432e-64
Identity = 117/183 (63.93%), Postives = 137/183 (74.86%), Query Frame = -1
Query:   32 LDTSVIVPWLRENY-GCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS I+PWL+E Y  CE+V F ADVGQG  EL+GL EKA ASGA +  + DLKEE V DYI+P +  GAIYE  YLLGTSMARP+IAKA V+VAR+VGADAV HGCTGKGNDQVRFE  F AL P+L V+APWREW +  RED ++Y  + N+    +   IYSRD N WH+SHEG  LEDP
Sbjct:   21 LDTSAIIPWLKETYDNCEIVAFCADVGQGEAELEGLHEKAIASGASECYIVDLKEELVADYIYPTIATGAIYEGTYLLGTSMARPIIAKAQVEVARKVGADAVCHGCTGKGNDQVRFEGCFAALAPDLTVIAPWREWSMVSREDLLDYLAERNIKTTASATKIYSRDANAWHISHEGGELEDP 203          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_CLOBB (Argininosuccinate synthase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=argG PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 4.482e-64
Identity = 111/182 (60.99%), Postives = 144/182 (79.12%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS+I+PWL+ENY CEV+    +VGQ   ELDGLEEKA  +GA +L ++DL +EFV+DYIFP ++AGAIYE KYLLGTS ARP+I K +V++A+  GADA+ HGCTGKGNDQVRFEL   A +P++ ++APWR WDI+ RED I YA+  NVP+ +  ++ YS+D+N+WHLSHEG  LEDP
Sbjct:   15 LDTSIIIPWLKENYNCEVIAVCGNVGQK-DELDGLEEKAIKTGASKLYIEDLTKEFVEDYIFPTIQAGAIYEGKYLLGTSFARPLIGKRLVEIAKAEGADAICHGCTGKGNDQVRFELAVKAFDPDMKIIAPWRIWDIKSREDEIAYAEARNVPIKINHETNYSKDKNIWHLSHEGLDLEDP 195          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_SHEDO (Argininosuccinate synthase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=argG PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 5.854e-64
Identity = 117/183 (63.93%), Postives = 139/183 (75.96%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYG-CEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS I+PWL+E Y  CE+V F ADVGQG +EL GL EKA ASGA +  + DLKEEFVKDYI+P +  GAIYE  YLLGTSMARP+IAKA V+VAR+VGADA+ HGCTGKGNDQVRFE  F AL P+L V+APWREW+++ RED + Y    ++    +   IYSRD N WH+SHEG  LEDP
Sbjct:   21 LDTSAIIPWLKETYDDCEIVAFCADVGQGEEELVGLTEKALASGASECHIVDLKEEFVKDYIYPTIATGAIYEGTYLLGTSMARPIIAKAQVEVARKVGADALCHGCTGKGNDQVRFEGCFAALAPDLKVIAPWREWEMRSREDLLAYLAARDIQTSASATKIYSRDANAWHISHEGGELEDP 203          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_MOOTA (Argininosuccinate synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=argG PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 7.645e-64
Identity = 117/182 (64.29%), Postives = 144/182 (79.12%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS+I+PWL+E YG EV+    DVGQG +EL+ LEEKA  SGA ++ + D K+EFV++YI+P L+AGA+YE KYLLGTS ARP+IAK +V+VA + GA AVAHG TGKGNDQVRFEL   ALNP+L V+APWR W+I+ RE+A++YA    +PVPVTK   YS DRNLWHLSHEG  LEDP
Sbjct:   19 LDTSIIIPWLKETYGYEVIAVAVDVGQG-EELEPLEEKAIKSGASKIYILDKKKEFVEEYIWPTLKAGAVYEGKYLLGTSFARPLIAKCLVEVAAQEGATAVAHGATGKGNDQVRFELGVKALNPQLKVIAPWRIWNIRSREEAMDYAAARGIPVPVTKDRPYSMDRNLWHLSHEGGDLEDP 199          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_SHESR (Argininosuccinate synthase OS=Shewanella sp. (strain MR-7) GN=argG PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 9.985e-64
Identity = 117/183 (63.93%), Postives = 139/183 (75.96%), Query Frame = -1
Query:   32 LDTSVIVPWLRENY-GCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS I+PWL+E Y  CE++ F ADVGQG +EL GL EKA ASGA +  + DLKEEFVKDYI+P +  GAIYE  YLLGTSMARP+IAKA V+VAR+VGADA+ HGCTGKGNDQVRFE  F AL P+L V+APWREW +Q RED + Y  + N+    +   IYSRD N +H+SHEG  LEDP
Sbjct:   21 LDTSAIIPWLKETYDNCEIIAFCADVGQGEEELVGLTEKALASGASECHIVDLKEEFVKDYIYPTMATGAIYEGTYLLGTSMARPIIAKAQVEVARKVGADALCHGCTGKGNDQVRFEGCFAALAPDLKVIAPWREWTMQSREDLLAYLAERNIKTSASATKIYSRDANAFHISHEGGELEDP 203          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_SHESM (Argininosuccinate synthase OS=Shewanella sp. (strain MR-4) GN=argG PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 9.985e-64
Identity = 117/183 (63.93%), Postives = 139/183 (75.96%), Query Frame = -1
Query:   32 LDTSVIVPWLRENY-GCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS I+PWL+E Y  CE++ F ADVGQG +EL GL EKA ASGA +  + DLKEEFVKDYI+P +  GAIYE  YLLGTSMARP+IAKA V+VAR+VGADA+ HGCTGKGNDQVRFE  F AL P+L V+APWREW +Q RED + Y  + N+    +   IYSRD N +H+SHEG  LEDP
Sbjct:   21 LDTSAIIPWLKETYDNCEIIAFCADVGQGEEELVGLTEKALASGASECHIVDLKEEFVKDYIYPTMATGAIYEGTYLLGTSMARPIIAKAQVEVARKVGADALCHGCTGKGNDQVRFEGCFAALAPDLKVIAPWREWTMQSREDLLAYLAERNIKTSASATKIYSRDANAFHISHEGGELEDP 203          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_SHESA (Argininosuccinate synthase OS=Shewanella sp. (strain ANA-3) GN=argG PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 9.985e-64
Identity = 117/183 (63.93%), Postives = 139/183 (75.96%), Query Frame = -1
Query:   32 LDTSVIVPWLRENY-GCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS I+PWL+E Y  CE++ F ADVGQG +EL GL EKA ASGA +  + DLKEEFVKDYI+P +  GAIYE  YLLGTSMARP+IAKA V+VAR+VGADA+ HGCTGKGNDQVRFE  F AL P+L V+APWREW +Q RED + Y  + N+    +   IYSRD N +H+SHEG  LEDP
Sbjct:   21 LDTSAIIPWLKETYDNCEIIAFCADVGQGEEELVGLTEKALASGASECHIVDLKEEFVKDYIYPTMATGAIYEGTYLLGTSMARPIIAKAQVEVARKVGADALCHGCTGKGNDQVRFEGCFAALAPDLKVIAPWREWTMQSREDLLAYLAERNIKTSASATKIYSRDANAFHISHEGGELEDP 203          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_SHEHH (Argininosuccinate synthase OS=Shewanella halifaxensis (strain HAW-EB4) GN=argG PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 9.985e-64
Identity = 116/183 (63.39%), Postives = 138/183 (75.41%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYG-CEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS I+PWL+E Y  CE++ F ADVGQG  EL+GL EKA ASGA +  + DLKEE V DYI+P +  GAIYE  YLLGTSMARP+IAKA V+VAR+VGADAV HGCTGKGNDQVRFE  F AL P+L V+APWREW++  RED ++Y  + N+    +   IYSRD N WH+SHEG  LEDP
Sbjct:   25 LDTSAIIPWLKETYDDCEIIAFCADVGQGDAELEGLYEKAIASGASECHIVDLKEELVADYIYPTIATGAIYEGTYLLGTSMARPIIAKAQVEVARKVGADAVCHGCTGKGNDQVRFEGCFAALAPDLKVIAPWREWEMVSREDLLDYLAERNIATSASATKIYSRDANAWHISHEGGELEDP 207          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_SHEFN (Argininosuccinate synthase OS=Shewanella frigidimarina (strain NCIMB 400) GN=argG PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 9.985e-64
Identity = 116/183 (63.39%), Postives = 139/183 (75.96%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYG-CEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS I+PWL+E Y  CE++ F ADVGQG +EL GL EKA ASGA +  + DLKEEFV DYI+P +  GAIYE  YLLGTSMARP+IAKA V+VAR+VGADAV HGCTGKGNDQVRFE  F AL P+L V+APWREW+++ RED + Y  + ++    +   IYSRD N WH+SHEG  LEDP
Sbjct:   21 LDTSAIIPWLKETYDDCEIIAFCADVGQGEEELVGLTEKALASGASECHIVDLKEEFVADYIYPTIATGAIYEGTYLLGTSMARPIIAKAQVEVARKVGADAVCHGCTGKGNDQVRFEGCFAALAPDLKVIAPWREWEMRSREDLLAYLAERDIKTSASATKIYSRDANAWHISHEGGELEDP 203          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_PELCD (Argininosuccinate synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=argG PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 9.985e-64
Identity = 111/182 (60.99%), Postives = 141/182 (77.47%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS+IV WL E YGCEV+ F ADVGQG KELDG+ EKA+ +GA +  V+DL+EEFV+D++FP  RA AIYE +Y LGTS+ARP+I+K  +++A    A+AV HG TGKGNDQ+RFEL ++  NPE+ ++APWREWD+  RE  I YA KH +PVPVTKK  +S DRNL H+S EG +LEDP
Sbjct:   18 LDTSIIVRWLIEEYGCEVIAFAADVGQG-KELDGIPEKARQTGASKCYVEDLREEFVRDFVFPMFRANAIYEGRYFLGTSIARPLISKKQMEIALAEEAEAVCHGATGKGNDQIRFELAYYHFNPEIKIIAPWREWDLNSRESLIAYANKHGIPVPVTKKRPWSSDRNLLHISFEGGVLEDP 198          
The following BLAST results are available for this feature:
BLAST of CB304754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASSY_SHELP3.432e-6463.93Argininosuccinate synthase OS=Shewanella loihica (... [more]
ASSY_CLOBB4.482e-6460.99Argininosuccinate synthase OS=Clostridium botulinu... [more]
ASSY_SHEDO5.854e-6463.93Argininosuccinate synthase OS=Shewanella denitrifi... [more]
ASSY_MOOTA7.645e-6464.29Argininosuccinate synthase OS=Moorella thermoaceti... [more]
ASSY_SHESR9.985e-6463.93Argininosuccinate synthase OS=Shewanella sp. (stra... [more]
ASSY_SHESM9.985e-6463.93Argininosuccinate synthase OS=Shewanella sp. (stra... [more]
ASSY_SHESA9.985e-6463.93Argininosuccinate synthase OS=Shewanella sp. (stra... [more]
ASSY_SHEHH9.985e-6463.39Argininosuccinate synthase OS=Shewanella halifaxen... [more]
ASSY_SHEFN9.985e-6463.39Argininosuccinate synthase OS=Shewanella frigidima... [more]
ASSY_PELCD9.985e-6460.99Argininosuccinate synthase OS=Pelobacter carbinoli... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_D09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_D09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304754 ID=CB304754; Name=CB304754; organism=Citrus sinensis; type=EST; length=577bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGATCTTCCAAGATGTCC
CCCTCATGGCTCAAGTGCCATAAATTCCGGTCTCTACTGTATATGGATTT
TTTTGTTACAGGAACAGGCACGTTGTGCTTCTTAGCATATTCAATAGCAT
CTTCTCTTCCCTGAATATCCCATTCCCTCCATGGAGCCACAACATTCAAC
TCAGGATTTAAAGCAAAGAATGTAAGCTCAAAGCGGACCTGGTCATTTCC
TTTTCCTGTGCACCCATGAGCGACAGCATCAGCTCCAACTTCTCTGGCAA
CATCCACCATGGCCTTGGCAATAACGGGGCGGGCCATTGATGTTCCCAGC
AGATACTTTCTCTCATAAATTGCACCAGCTCGCAAGCAAGGAAATATATA
GTCTTTAACAAATTCCTCCTTCAAATCCTTCACCACTAACTGACAAGCTC
CACTAGCCTTGGCCTTCTCTTCCAATCCATCCAATTCCTTGATTCCTTGA
CCAACATCAGCAGTGAAACAAACAACCTCACAACCATAATTCTCCCTTAG
CCATGGCACAATGACTGAAGTGTCTAA
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